RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB11748" and tax_phylum = "Nitrospinota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospinota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB11748 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26684520 26684520 PRJEB11748_P_NODE_215221_length_271_cov_3.542857_g213038_i0 PRJEB11748 215221 271 3.542857 9.60114247 Nitrospinota bacterium 2026769 Bacteria Bacteria 45.1 0.00758   NR MBI5427517.1 2026769 g213038 i0 31.3 1.5830258302583 80 47 85.2 3 18 248 74 148 MBI5427517.1 SEC-C domain-containing protein [Nitrospinota bacterium] diamond 429 45.1 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium
31265113 31265113 PRJEB11748_P_NODE_173435_length_308_cov_9.797571_g171252_i0 PRJEB11748 173435 308 9.797571 30.17651868 Nitrospinaceae bacterium 2358456 Bacteria Bacteria 61.6 1.98e-9   NR MEO2043881.1 2358456 g171252 i0 61.7 0.457792207792208 47 18 45.8 0 167 307 77 123 MEO2043881.1 6-carboxytetrahydropterin synthase [Nitrospinaceae bacterium] diamond 141 61.6 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae   Nitrospinaceae bacterium
31897815 31897815 PRJEB11748_P_NODE_340377_length_202_cov_3.964539_g338194_i0 PRJEB11748 340377 202 3.964539 8.00836878 Nitrospinaceae bacterium 2358456 Bacteria Bacteria 42.4 0.00433   NR GJL78700.1 2358456 g338194 i0 78.3 0.920792079207921 23 5 34.2 0 102 170 12 34 GJL78700.1 MAG: hypothetical protein NPINA01_16890 [Nitrospinaceae bacterium] diamond 186 42.4 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae   Nitrospinaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;