RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJEB11748" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB11748 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26652739 26652739 PRJEB11748_P_NODE_274041_length_233_cov_1.122093_g271858_i0 PRJEB11748 274041 233 1.122093 2.61447669 Fibrobacterota bacterium 2052160 Bacteria Bacteria 58.5 8.51e-8   NR MDQ3002693.1 2052160 g271858 i0 57.4 0.695278969957081 54 23 69.5 0 6 167 19 72 MDQ3002693.1 fatty acid desaturase [Fibrobacterota bacterium] diamond 162 58.5 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium
26741332 26741332 PRJEB11748_P_NODE_104821_length_407_cov_11.520231_g102649_i0 PRJEB11748 104821 407 11.520231 46.88734017 Bacteria 2 Bacteria Bacteria 143 1.3e-40   NR MCQ2106865.1 35828 g102649 i0 73.6 1.34152334152334 91 24 67.1 0 113 385 66 156 MCQ2106865.1 hypothetical protein [Fibrobacter sp.] diamond 546 143 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.
27380651 27380651 PRJEB11748_P_NODE_16503_length_1151_cov_3.920183_g15161_i0 PRJEB11748 16503 1151 3.920183 45.12130633 Fibrobacteria bacterium 2725311 Bacteria Bacteria 377 1.73e-125   NR MEO7955195.1 2725311 g15161 i0 72 1.28236316246742 246 67 63.6 1 1149 418 163 408 MEO7955195.1 hypothetical protein [Fibrobacteria bacterium] diamond 1476 377 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       Fibrobacteria bacterium
30601349 30601349 PRJEB11748_P_NODE_105173_length_407_cov_1.667630_g103001_i0 PRJEB11748 105173 407 1.66763 6.7872541 Fibrobacter sp. 35828 Bacteria Bacteria 67.4 1.23e-10   NR MBR4006307.1 35828 g103001 i0 40.5 0.582309582309582 79 46 58.2 1 384 148 33 110 MBR4006307.1 hypothetical protein [Fibrobacter sp.] diamond 237 67.4 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.
30727967 30727967 PRJEB11748_P_NODE_315794_length_212_cov_3.079470_g313611_i0 PRJEB11748 315794 212 3.07947 6.5284764 Fibrobacterota bacterium 2052160 Bacteria Bacteria 64.3 6.13e-10   NR MEN9308860.1 2052160 g313611 i0 50 0.877358490566038 62 29 84.9 1 31 210 221 282 MEN9308860.1 teichoic acid export ATP-binding protein TagH [Fibrobacterota bacterium] diamond 186 64.3 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium
32619013 32619013 PRJEB11748_P_NODE_242180_length_252_cov_1.785340_g239997_i0 PRJEB11748 242180 252 1.78534 4.4990568 FCB group 1783270 Bacteria Bacteria 73.6 1.91e-14   NR WP_295860758.1 261512 g239997 i0 60.7 5.30952380952381 56 21 65.5 1 170 6 54 109 WP_295860758.1 hypothetical protein [uncultured Fibrobacter sp.] diamond 1338 73.6 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter uncultured Fibrobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;