RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJEB11748" and tax_phylum = "Candidatus Staskawicziibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Staskawicziibacteriota · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB11748 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28226578 28226578 PRJEB11748_P_NODE_308906_length_215_cov_4.318182_g306723_i0 PRJEB11748 308906 215 4.318182 9.2840913 Bacteria 2 Bacteria Bacteria 56.2 1.37e-7   NR OGZ63813.1 1802202 g306723 i0 45.3 1.5906976744186 53 29 74 0 211 53 40 92 OGZ63813.1 MAG: hypothetical protein A2730_00810 [Candidatus Staskawiczbacteria bacterium RIFCSPHIGHO2_01_FULL_39_25] diamond 342 56.2 1 Bacteria Bacteria candidate phyla   Candidatus Staskawicziibacteriota         Candidatus Staskawiczbacteria bacterium RIFCSPHIGHO2_01_FULL_39_25
31448790 31448790 PRJEB11748_P_NODE_201176_length_282_cov_28.457014_g198993_i0 PRJEB11748 201176 282 28.457014 80.24877948 Bacteria 2 Bacteria Bacteria 75.9 1.04e-13   NR OGZ66506.1 1802203 g198993 i0 80.4 2.42553191489362 46 9 48.9 0 145 282 249 294 OGZ66506.1 MAG: DNA polymerase III subunit beta [Candidatus Staskawiczbacteria bacterium RIFCSPHIGHO2_01_FULL_41_41] diamond 684 76.6 0.990861618798956 Bacteria Bacteria candidate phyla   Candidatus Staskawicziibacteriota         Candidatus Staskawiczbacteria bacterium RIFCSPHIGHO2_01_FULL_41_41
32562552 32562552 PRJEB11748_P_NODE_321719_length_209_cov_16.358108_g319536_i0 PRJEB11748 321719 209 16.358108 34.18844572 Candidatus Staskawiczbacteria bacterium RIFCSPHIGHO2_ 2053617 Bacteria Bacteria 61.6 2.92e-9   NR OGZ69740.1 1802207 g319536 i0 74.4 0.559808612440191 39 10 56 0 24 140 210 248 OGZ69740.1 MAG: hypothetical protein A3D44_04315 [Candidatus Staskawiczbacteria bacterium RIFCSPHIGHO2_02_FULL_42_22] diamond 117 61.6 1 Bacteria Bacteria candidate phyla   Candidatus Staskawicziibacteriota         Candidatus Staskawiczbacteria bacterium RIFCSPHIGHO2_02_FULL_42_22

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;