RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJEB11748" and tax_phylum = "Candidatus Lithacetigenota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Lithacetigenota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJEB11748 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2565288 2565288 PRJEB11748_P_NODE_175043_length_307_cov_1.670732_g172860_i0 PRJEB11748 175043 307 1.670732 5.12914724 Candidatus Psychracetigena formicireducens 2986056 Bacteria Bacteria 64.3 2.06e-9   NR MBT9150894.1 2986056 g172860 i0 40 1.6514657980456 90 48 82.1 2 270 19 21 110 MBT9150894.1 hypothetical protein [Candidatus Psychracetigena formicireducens] diamond 507 64.3 1 Bacteria   Bacillati Candidatus Lithacetigenota       Candidatus Psychracetigena Candidatus Psychracetigena formicireducens
31012407 31012407 PRJEB11748_P_NODE_376555_length_182_cov_6.256198_g374372_i0 PRJEB11748 376555 182 6.256198 11.38628036 Candidatus Psychracetigena formicireducens 2986056 Bacteria Bacteria 44.3 0.00469   NR MBT9145237.1 2986056 g374372 i0 41.9 0.708791208791209 43 25 70.9 0 16 144 197 239 MBT9145237.1 hypothetical protein [Candidatus Psychracetigena formicireducens] diamond 129 44.3 1 Bacteria   Bacillati Candidatus Lithacetigenota       Candidatus Psychracetigena Candidatus Psychracetigena formicireducens

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;