RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB11748" and tax_phylum = "Calditrichota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Calditrichota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJEB11748 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6394408 6394408 PRJEB11748_P_NODE_220706_length_267_cov_2.213592_g218523_i0 PRJEB11748 220706 267 2.213592 5.91029064 Pseudomonadati 3379134 Bacteria Bacteria 143 8.98e-38   NR MCB0307127.1 2212469 g218523 i0 78.6 4.71910112359551 84 18 94.4 0 252 1 85 168 MCB0307127.1 T9SS type A sorting domain-containing protein [Calditrichota bacterium] diamond 1260 144 0.993055555555556 Bacteria   Pseudomonadati Calditrichota         Calditrichota bacterium
17866787 17866787 PRJEB11748_P_NODE_157835_length_326_cov_1.924528_g155653_i0 PRJEB11748 157835 326 1.924528 6.27396128 Caldithrix abyssi 187145 Bacteria Bacteria 73.1 2.35e-8   NTclustered gi|1108618394|gb|CP018099.1| 880073 g155653 i0 86.364 0.202453987730061 66 9 20 0 1 66 75655 75720 Caldithrix abyssi DSM 13497, complete genome blastn 66 73.1 1 Bacteria   Pseudomonadati Calditrichota Calditrichia Calditrichales Calditrichaceae Caldithrix Caldithrix abyssi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;