RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJEB11748" and tax_phylum = "Blastocladiomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB11748 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6393940 6393940 PRJEB11748_P_NODE_196506_length_286_cov_22.466667_g194323_i0 PRJEB11748 196506 286 22.466667 64.25466762 Blastocladiella sp. 2169676 Fungi Fungi 261 4.03e-65   NTclustered gi|1866582610|gb|MT730785.1| 2169676 g194323 i0 85.328 75.9440559440559 259 31 89 6 32 286 3728 3983 Blastocladiella sp. isolate JEL0703 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 21720 261 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella sp.
11498298 11498298 PRJEB11748_P_NODE_84610_length_456_cov_2.726582_g82445_i0 PRJEB11748 84610 456 2.726582 12.43321392 Blastocladiella britannica 64508 Fungi Fungi 124 1.0699999999999999e-31   NR KAI9222377.1 64508 g82445 i0 53.2 0.730263157894737 111 52 73 0 57 389 2 112 KAI9222377.1 PITH domain-containing protein [Blastocladiella britannica] diamond 333 124 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella britannica
29805473 29805473 PRJEB11748_P_NODE_359771_length_192_cov_29.778626_g357588_i0 PRJEB11748 359771 192 29.778626 57.17496192 Fungi 4751 Fungi Fungi 80.9 6.69e-16   NR ORZ36542.1 765915 g357588 i0 64.3 9.34375 56 20 87.5 0 14 181 423 478 ORZ36542.1 T-complex protein 1 subunit gamma [Catenaria anguillulae PL171] diamond 1794 81.6 0.991421568627451 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Catenariaceae Catenaria Catenaria anguillulae
32271369 32271369 PRJEB11748_P_NODE_228298_length_261_cov_6.010000_g226115_i0 PRJEB11748 228298 261 6.01 15.6861 Allomyces 28581 Fungi Fungi 55.5 1.56e-6   NR KAJ3366950.1 64505 g226115 i0 45.5 2.31034482758621 55 29 62.1 1 16 177 109 163 KAJ3366950.1 Strongly-conserved Zn-finger binding protein (TFIIIA) [Allomyces javanicus] diamond 603 55.8 0.99462365591397806 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Allomyces Allomyces javanicus
32429523 32429523 PRJEB11748_P_NODE_19759_length_1038_cov_9.353122_g18259_i0 PRJEB11748 19759 1038 9.353122 97.08540636 Allomyces 28581 Fungi Fungi 107 1.16e-21   NR KAJ3365597.1 64505 g18259 i0 36.6 1.08381502890173 183 98 50.9 8 1017 490 281 452 KAJ3365597.1 hypothetical protein GGF32_008730 [Allomyces javanicus] diamond 1125 108 0.990740740740741 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Allomyces Allomyces javanicus
32719635 32719635 PRJEB11748_P_NODE_17180_length_1124_cov_1.864534_g15796_i0 PRJEB11748 17180 1124 1.864534 20.95736216 Paraphysoderma sedebokerense 1500003 Fungi Fungi 111 1.44e-22   NR KAI9144706.1 1500003 g15796 i0 46 0.597864768683274 113 61 30.2 0 362 700 393 505 KAI9144706.1 hypothetical protein BKA69DRAFT_1053950 [Paraphysoderma sedebokerense] diamond 672 111 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Paraphysoderma Paraphysoderma sedebokerense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;