RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJEB11748" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 9 ✖

bioproject 1

  • PRJEB11748 · 9 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5117527 5117527 PRJEB11748_P_NODE_162425_length_320_cov_9.895753_g160242_i0 PRJEB11748 162425 320 9.895753 31.6664096 Lentivirus humimdef1 3418650 Viruses Viruses 52.8 0.03   NTclustered gi|1789282585|gb|MK458088.1| 11676 g160242 i0 100 0.175 28 0 18 0 41 68 246 273 HIV-1 isolate 074-A-106-1-6_w0_324 from Botswana, complete genome blastn 56 52.8 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
6086980 6086980 PRJEB11748_P_NODE_250185_length_246_cov_1993.259459_g248002_i0 PRJEB11748 250185 246 1993.259459 4903.41826914 root 1 Root_unresolved Root_unresolved 54.7 0.006   NTclustered gi|1789282585|gb|MK458088.1| 11676 g248002 i0 100 0.638211382113821 29 0 24 0 74 102 245 273 HIV-1 isolate 074-A-106-1-6_w0_324 from Botswana, complete genome blastn 157 54.7 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
7668097 7668097 PRJEB11748_P_NODE_199967_length_283_cov_2823.882883_g197784_i0 PRJEB11748 199967 283 2823.882883 7991.58855889 Lentivirus humimdef1 3418650 Viruses Viruses 52.8 0.026   NTclustered gi|1789282585|gb|MK458088.1| 11676 g197784 i0 100 0.0989399293286219 28 0 10 0 63 90 246 273 HIV-1 isolate 074-A-106-1-6_w0_324 from Botswana, complete genome blastn 28 52.8 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
7670054 7670054 PRJEB11748_P_NODE_308067_length_215_cov_104.090909_g305884_i0 PRJEB11748 308067 215 104.090909 223.79545435 Lentivirus humimdef1 3418650 Viruses Viruses 54.7 0.005   NTclustered gi|1789282585|gb|MK458088.1| 11676 g305884 i0 100 0.66046511627907 29 0 27 0 49 77 245 273 HIV-1 isolate 074-A-106-1-6_w0_324 from Botswana, complete genome blastn 142 54.7 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
15320245 15320245 PRJEB11748_P_NODE_312473_length_213_cov_355.243421_g310290_i0 PRJEB11748 312473 213 355.243421 756.66848673 Lentivirus humimdef1 3418650 Viruses Viruses 54.7 0.005   NTclustered gi|1789282585|gb|MK458088.1| 11676 g310290 i0 100 0.267605633802817 29 0 27 0 2 30 245 273 HIV-1 isolate 074-A-106-1-6_w0_324 from Botswana, complete genome blastn 57 54.7 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
16593904 16593904 PRJEB11748_P_NODE_263614_length_238_cov_2338.022599_g261431_i0 PRJEB11748 263614 238 2338.022599 5564.49378562 Lentivirus humimdef1 3418650 Viruses Viruses 52.8 0.021   NTclustered gi|1789282585|gb|MK458088.1| 11676 g261431 i0 100 0.235294117647059 28 0 24 0 186 213 273 246 HIV-1 isolate 074-A-106-1-6_w0_324 from Botswana, complete genome blastn 56 52.8 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
19144666 19144666 PRJEB11748_P_NODE_395056_length_168_cov_36.598131_g392873_i0 PRJEB11748 395056 168 36.598131 61.48486008 Lentivirus humimdef1 3418650 Viruses Viruses 52.8 0.014   NTclustered gi|1789282585|gb|MK458088.1| 11676 g392873 i0 100 0.333333333333333 28 0 33 0 133 160 273 246 HIV-1 isolate 074-A-106-1-6_w0_324 from Botswana, complete genome blastn 56 52.8 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
20417991 20417991 PRJEB11748_P_NODE_277857_length_230_cov_1036.923077_g275674_i0 PRJEB11748 277857 230 1036.923077 2384.9230771 Lentivirus humimdef1 3418650 Viruses Viruses 54.7 0.006   NTclustered gi|1789282585|gb|MK458088.1| 11676 g275674 i0 100 0.252173913043478 29 0 25 0 62 90 245 273 HIV-1 isolate 074-A-106-1-6_w0_324 from Botswana, complete genome blastn 58 54.7 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
22970166 22970166 PRJEB11748_P_NODE_329079_length_206_cov_254.648276_g326896_i0 PRJEB11748 329079 206 254.648276 524.57544856 Lentivirus humimdef1 3418650 Viruses Viruses 54.7 0.005   NTclustered gi|1789282585|gb|MK458088.1| 11676 g326896 i0 100 0.140776699029126 29 0 14 0 3 31 245 273 HIV-1 isolate 074-A-106-1-6_w0_324 from Botswana, complete genome blastn 29 54.7 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;