RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJEB11748" and tax_clade = "acIV cluster"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • acIV cluster · 1 ✖

bioproject 1

  • PRJEB11748 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29710470 29710470 PRJEB11748_P_NODE_67850_length_513_cov_5.701327_g65705_i0 PRJEB11748 67850 513 5.701327 29.24780751 Acidimicrobium 53634 Bacteria Bacteria 317 1.98e-108   NR KRO49066.1 1655583 g65705 i0 92.9 1.9766081871345 169 12 98.8 0 3 509 11 179 KRO49066.1 MAG: hypothetical protein ABR75_04015, partial [Acidimicrobiia bacterium BACL6 MAG-120924-bin43] diamond 1014 317 1 Bacteria acIV cluster Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium BACL6 MAG-120924-bin43

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;