RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

1 row where bioproject = "PRJEB11748", tax_clade = "ac1 cluster" and tax_kingdom = "Bacillati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Bacillati · 1 ✖

tax_clade 1

  • ac1 cluster · 1 ✖

bioproject 1

  • PRJEB11748 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32562561 32562561 PRJEB11748_P_NODE_340119_length_202_cov_5.432624_g337936_i0 PRJEB11748 340119 202 5.432624 10.97390048 Actinobacteria bacterium BACL15 MAG-12 2900548 Bacteria Bacteria 69.7 1.12e-12   NR KRO35215.1 1655563 g337936 i0 94.9 0.579207920792079 39 2 57.9 0 32 148 154 192 KRO35215.1 MAG: hypothetical protein ABR55_04265 [Actinobacteria bacterium BACL15 MAG-120823-bin78] diamond 117 69.7 1 Bacteria ac1 cluster Bacillati Actinomycetota Actinomycetes       Actinobacteria bacterium BACL15 MAG-120823-bin78

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;