RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB11748", tax_clade = "Sar" and tax_phylum = "Foraminifera"

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tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB11748 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10217541 10217541 PRJEB11748_P_NODE_145089_length_341_cov_11.292857_g142909_i0 PRJEB11748 145089 341 11.292857 38.50864237 Globorotalia inflata 69028 SAR_Eukaryotes SAR_Eukaryotes 224 6.45e-54   NTclustered gi|998623040|dbj|LC049319.1| 69028 g142909 i0 92.025 18.2434017595308 163 7 46 3 21 178 3493 3654 Globorotalia inflata gene for 28S rRNA, partial sequence, isolate: 11-9-T65 blastn 6221 224 1 Eukaryota Sar   Foraminifera   Rotaliida Globorotaliidae Globorotalia Globorotalia inflata
16591073 16591073 PRJEB11748_P_NODE_119594_length_379_cov_13.977987_g117418_i0 PRJEB11748 119594 379 13.977987 52.97657073 Pulleniatina obliquiloculata 225066 SAR_Eukaryotes SAR_Eukaryotes 315 4.17e-81   NTclustered gi|998623044|dbj|LC049323.1| 225066 g117418 i0 87.153 44.6332453825857 288 23 73 11 96 370 4074 4360 Pulleniatina obliquiloculata gene for 28S rRNA, partial sequence, isolate: KH281 blastn 16916 315 1 Eukaryota Sar   Foraminifera   Rotaliida Pulleniatinidae Pulleniatina Pulleniatina obliquiloculata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;