RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB11748", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB11748 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
983127 983127 PRJEB11748_P_NODE_162761_length_320_cov_3.455598_g160578_i0 PRJEB11748 162761 320 3.455598 11.0579136 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 121 8.11e-23   NTclustered gi|1031965308|gb|KX011113.1| 933485 g160578 i0 79.882 39.334375 169 30 52 4 151 317 4654 4820 Maullinia ectocarpi isolate CCAP 1538/1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 12587 121 1 Eukaryota Sar   Endomyxa Phytomyxea Phagomyxida   Maullinia Maullinia ectocarpi
21692612 21692612 PRJEB11748_P_NODE_202418_length_281_cov_25.127273_g200235_i0 PRJEB11748 202418 281 25.127273 70.60763713 Polymyxa betae 41456 SAR_Eukaryotes SAR_Eukaryotes 115 3.26e-21   NTclustered gi|2127897050|ref|NC_059071.1| 41456 g200235 i0 79.032 0.9644128113879 186 26 63 12 82 258 20832 20651 Polymyxa betae isolate A26-41 genome assembly, organelle: mitochondrion blastn 271 115 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Polymyxa Polymyxa betae
31138431 31138431 PRJEB11748_P_NODE_306555_length_216_cov_5.729032_g304372_i0 PRJEB11748 306555 216 5.729032 12.37470912 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 87 5.34e-18   NR CEP02393.1 37360 g304372 i0 81.3 0.666666666666667 48 9 66.7 0 187 44 217 264 CEP02393.1 hypothetical protein PBRA_008977 [Plasmodiophora brassicae] diamond 144 87 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;