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contig_metadata

9 rows where bioproject = "PRJEB11748", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 9 ✖

tax_clade 1

  • Amoebozoa · 9 ✖

bioproject 1

  • PRJEB11748 · 9 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
984073 984073 PRJEB11748_P_NODE_289621_length_224_cov_16.018405_g287438_i0 PRJEB11748 289621 224 16.018405 35.8812272 Saccamoeba 136463 Tubulinea other_Eukaryota 204 5.19e-48   NTclustered gi|399764206|gb|JQ271717.1| 1215623 g287438 i0 88.439 76.3571428571429 173 14 75 4 34 201 172 1 Saccamoeba sp. DP7 18S ribosomal RNA gene, partial sequence blastn 17104 204 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba sp. DP7
6393662 6393662 PRJEB11748_P_NODE_182446_length_299_cov_11.945378_g180263_i0 PRJEB11748 182446 299 11.945378 35.71668022 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 490 4.97e-134   NTclustered gi|300078496|gb|GU001158.1| 5778 g180263 i0 98.556 31.6086956521739 277 4 93 0 23 299 2876 3152 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 9451 490 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
11497177 11497177 PRJEB11748_P_NODE_400850_length_165_cov_4.826923_g398667_i0 PRJEB11748 400850 165 4.826923 7.96442295 Rhizamoeba saxonica 200886 Tubulinea other_Eukaryota 93.5 8.13e-15   NTclustered gi|300078497|gb|GU001159.1| 200886 g398667 i0 88.608 39.4121212121212 79 6 46 3 12 87 1179 1101 Rhizamoeba saxonica 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6503 93.5 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Rhizamoeba Rhizamoeba saxonica
12463476 12463476 PRJEB11748_P_NODE_317550_length_211_cov_6.700000_g315367_i0 PRJEB11748 317550 211 6.7 14.137 Elardia 2681632 Tubulinea other_Eukaryota 182 2.27e-41   NTclustered gi|145386791|gb|EF216916.1| 136459 g315367 i0 89.583 59.3696682464455 144 13 67 1 49 190 1511 1368 Paraflabellula hoguae 28S large subunit ribosomal RNA gene, partial sequence blastn 12527 182 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Paraflabellula Paraflabellula hoguae
16288153 16288153 PRJEB11748_P_NODE_92433_length_435_cov_7.163102_g90265_i0 PRJEB11748 92433 435 7.163102 31.1594937 Hartmannellidae 5776 Tubulinea other_Eukaryota 761 0   NTclustered gi|11527309|gb|AF293902.1|AF293902 136464 g90265 i0 98.605 92.9287356321839 430 6 99 0 6 435 789 1218 Saccamoeba limax small subunit ribosomal RNA gene, complete sequence blastn 40424 767 0.992177314211212 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba limax
16591638 16591638 PRJEB11748_P_NODE_145314_length_341_cov_4.667857_g143134_i0 PRJEB11748 145314 341 4.667857 15.91739237 Rhizamoeba saxonica 200886 Tubulinea other_Eukaryota 195 5.0599999999999995e-45   NTclustered gi|300078497|gb|GU001159.1| 200886 g143134 i0 85.263 40.7859237536657 190 27 55 1 1 189 4137 4326 Rhizamoeba saxonica 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 13908 195 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Rhizamoeba Rhizamoeba saxonica
18834884 18834884 PRJEB11748_P_NODE_156615_length_327_cov_5.879699_g154433_i0 PRJEB11748 156615 327 5.879699 19.22661573 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 558 1.49e-154   NTclustered gi|300078496|gb|GU001158.1| 5778 g154433 i0 99.672 56.434250764526 305 1 93 0 23 327 931 1235 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 18454 558 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
22965975 22965975 PRJEB11748_P_NODE_113419_length_390_cov_11.547112_g111245_i0 PRJEB11748 113419 390 11.547112 45.0337368 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 678 0   NTclustered gi|292559443|ref|NC_013986.1| 5778 g111245 i0 100 0.941025641025641 367 0 94 0 24 390 14983 14617 Hartmannella vermiformis mitochondrion, complete genome blastn 367 678 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
25210220 25210220 PRJEB11748_P_NODE_288700_length_225_cov_2.353659_g286517_i0 PRJEB11748 288700 225 2.353659 5.29573275 Vermamoeba 1260114 Tubulinea other_Eukaryota 329 8.25e-86   NTclustered gi|909719645|gb|KT185625.1| 5778 g286517 i0 96.098 2.72888888888889 205 3 90 4 4 205 5772 5570 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 614 329 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;