RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJEB11523" and tax_phylum = "Caldisericota"

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tax_superkingdom 1

tax_phylum 1

  • Caldisericota · 1 ✖

tax_kingdom 1

bioproject 1

  • PRJEB11523 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29338077 29338077 PRJEB11523_P_NODE_3969_length_241_cov_8.578125_g3891_i0 PRJEB11523 3969 241 8.578125 20.67328125 Caldisericia bacterium 2758719 Bacteria Bacteria 139 7.15e-38   NR HQJ57415.1 2758719 g3891 i0 91.4 0.871369294605809 70 6 87.1 0 229 20 285 354 HQJ57415.1 toprim domain-containing protein [Caldisericia bacterium] diamond 210 139 1 Bacteria Caldisericota/Cryosericota group Pseudomonadati Caldisericota Caldisericia       Caldisericia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;