RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJEB11523" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 6 ✖

bioproject 1

  • PRJEB11523 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6391885 6391885 PRJEB11523_P_NODE_1186_length_541_cov_32.906504_g1109_i0 PRJEB11523 1186 541 32.906504 178.02418664 Leptotrichia sp. HMT-225 3058373 Bacteria Bacteria 942 0   NTclustered gi|2557559843|gb|CP130323.1| 3058373 g1109 i0 99.422 254.338262476895 519 3 96 0 23 541 196667 197185 Leptotrichia sp. HMT-225 chromosome, complete genome blastn 137597 942 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. HMT-225
13735982 13735982 PRJEB11523_P_NODE_1311_length_506_cov_4.017505_g1233_i0 PRJEB11523 1311 506 4.017505 20.3285753 Sneathia 168808 Bacteria Bacteria 459 2.5e-124   NTclustered gi|2769805188|gb|CP160095.1| 40543 g1233 i0 83.976 163.272727272727 493 63 96 15 22 506 72077 72561 Sneathia sanguinegens strain CCUG 41628T chromosome, complete genome blastn 82616 459 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Sneathia Sneathia sanguinegens
14041783 14041783 PRJEB11523_P_NODE_1272_length_516_cov_2.655246_g1195_i0 PRJEB11523 1272 516 2.655246 13.70106936 Fusobacterium gastrosuis 1755100 Bacteria Bacteria 608 2.389999999999999e-169   NTclustered gi|1795735174|emb|LT607734.1| 1755100 g1195 i0 89.278 94.6937984496124 485 52 94 0 11 495 671576 671092 Fusobacterium sp. P6 Po strain Fusobacterium gastrosuis sp. nov. CDW1, P6 Po genome assembly, chromosome: chr blastn 48862 608 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium gastrosuis
15315945 15315945 PRJEB11523_P_NODE_1873_length_400_cov_47.857550_g1795_i0 PRJEB11523 1873 400 47.85755 191.4302 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 562 1.43e-155   NTclustered gi|922689899|gb|CP012410.1| 712357 g1795 i0 93.634 142.245 377 23 94 1 24 399 51724 52100 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 56898 562 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
17560402 17560402 PRJEB11523_P_NODE_4834_length_214_cov_2.472727_g4756_i0 PRJEB11523 4834 214 2.472727 5.29163578 Fusobacterium 848 Bacteria Bacteria 350 5.97e-92   NTclustered gi|2704983719|gb|CP077132.1| 851 g4756 i0 99.479 436.07476635514 192 1 90 0 23 214 92844 93035 Fusobacterium nucleatum strain KCOM3208 chromosome, complete genome blastn 93320 353 0.991501416430595 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
19139274 19139274 PRJEB11523_P_NODE_7316_length_169_cov_2.075000_g7238_i0 PRJEB11523 7316 169 2.075 3.50675 Fusobacterium gastrosuis 1755100 Bacteria Bacteria 285 1.28e-72   NTclustered gi|1112914081|emb|LN906797.3| 1755100 g7238 i0 98.171 355.426035502959 164 2 96 1 1 163 164 1 Fusobacterium gastrosuis partial 16S rRNA gene, type strain CDW1T, isolate P6 Po blastn 60067 285 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium gastrosuis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;