RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB11523", tax_kingdom = "Fungi" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 4 ✖

tax_kingdom 1

  • Fungi · 4 ✖

tax_clade 1

bioproject 1

  • PRJEB11523 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2563620 2563620 PRJEB11523_P_NODE_2783_length_305_cov_15.226562_g2705_i0 PRJEB11523 2783 305 15.226562 46.4410141 Quaeritorhiza haematococci 2654861 Fungi Fungi 136 2.21e-37   NR KAJ3072368.1 2654861 g2705 i0 73.5 8.8327868852459 83 22 81.6 0 255 7 1 83 KAJ3072368.1 hypothetical protein HK102_006249 [Quaeritorhiza haematococci] diamond 2694 136 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes   Quaeritorhizaceae Quaeritorhiza Quaeritorhiza haematococci
30285932 30285932 PRJEB11523_P_NODE_812_length_671_cov_4.319936_g743_i0 PRJEB11523 812 671 4.319936 28.98677056 Blyttiomyces sp. JEL 2750429 Fungi Fungi 59.3 3.27e-6   NR KAJ3313067.1 2724214 g743 i0 31.4 0.456035767511177 102 66 45.6 1 364 669 39 136 KAJ3313067.1 Kinesin light chain 3 [Blyttiomyces sp. JEL0837] diamond 306 59.3 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes     Blyttiomyces Blyttiomyces sp. JEL0837
31518194 31518194 PRJEB11523_P_NODE_3216_length_277_cov_32.491228_g3138_i0 PRJEB11523 3216 277 32.491228 90.00070156 Entophlyctis helioformis 281842 Fungi Fungi 65.5 1.25e-10   NR KAI8912137.1 281842 g3138 i0 59.6 0.563176895306859 52 20 56.3 1 85 240 1 51 KAI8912137.1 inosine triphosphate pyrophosphatase [Entophlyctis helioformis] diamond 156 65.5 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Entophlyctis Entophlyctis helioformis
32499058 32499058 PRJEB11523_P_NODE_5559_length_197_cov_3.283784_g5481_i0 PRJEB11523 5559 197 3.283784 6.46905448 Neocallimastix lanati (nom. inval.) 2767002 Fungi Fungi 59.7 2.12e-8   NR KAG4105511.1 2767002 g5481 i0 51.9 3.19796954314721 52 25 79.2 0 27 182 231 282 KAG4105511.1 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunit [Neocallimastix lanati (nom. inval.)] diamond 630 59.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Neocallimastix Neocallimastix lanati (nom. inval.)

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;