RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB11523", tax_clade = "Stenosarchaea group" and tax_phylum = "Methanobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 3 ✖

bioproject 1

  • PRJEB11523 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20414389 20414389 PRJEB11523_P_NODE_6317_length_184_cov_0.859259_g6239_i0 PRJEB11523 6317 184 0.859259 1.58103656 Halosimplex pelagicum 869886 Archaea Archaea 76.8 9.31e-10   NTclustered gi|1870066477|gb|CP058909.1| 869886 g6239 i0 92.593 1.92391304347826 54 2 65 2 82 134 3650062 3650010 Halosimplex pelagicum strain R2 chromosome, complete genome blastn 354 76.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halosimplex Halosimplex pelagicum
26811258 26811258 PRJEB11523_P_NODE_681_length_735_cov_3.696793_g618_i0 PRJEB11523 681 735 3.696793 27.17142855 Methanosarcina sp. 2213 Archaea Archaea 139 3.76e-37   NR HET8685212.1 2213 g618 i0 45.9 0.604081632653061 148 77 59.6 2 470 33 13 159 HET8685212.1 NUDIX domain-containing protein [Methanosarcina sp.] diamond 444 139 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
29716641 29716641 PRJEB11523_P_NODE_4650_length_218_cov_5.106509_g4572_i0 PRJEB11523 4650 218 5.106509 11.13218962 Candidatus Methanogaster sp. 3386292 Archaea Archaea 49.7 6.95e-5   NR PXF61762.1 3386292 g4572 i0 39.4 0.908256880733945 66 40 90.8 0 1 198 71 136 PXF61762.1 MAG: hypothetical protein C4B59_02605 [Candidatus Methanogaster sp.] diamond 198 49.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Candidatus Methanogasteraceae Candidatus Methanogaster Candidatus Methanogaster sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;