RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB11523", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJEB11523 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13705 13705 PRJEB11523_P_NODE_1061_length_575_cov_10.431559_g985_i0 PRJEB11523 1061 575 10.431559 59.98146425 Pratylenchus vulnus 45931 Nematoda Nematoda 58.4 0.001   NTclustered gi|1557394408|emb|LR031564.1| 45931 g985 i0 100 0.0539130434782609 31 0 5 0 1 31 23 53 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 31 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
14041796 14041796 PRJEB11523_P_NODE_1992_length_385_cov_39.726190_g1914_i0 PRJEB11523 1992 385 39.72619 152.9458315 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.037   NTclustered gi|1557394408|emb|LR031564.1| 45931 g1914 i0 100 0.0727272727272727 28 0 7 0 358 385 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
32397932 32397932 PRJEB11523_P_NODE_4759_length_216_cov_1.532934_g4681_i0 PRJEB11523 4759 216 1.532934 3.31113744 Caenorhabditis 6237 Nematoda Nematoda 51.2 2.76e-5   NR XP_045093547.1 6238 g4681 i0 51.1 1.95833333333333 47 22 65.3 1 31 171 531 576 XP_045093547.1 Protein CBR-OBR-3 [Caenorhabditis briggsae] diamond 423 51.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;