RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB11523", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJEB11523 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29463903 29463903 PRJEB11523_P_NODE_7870_length_165_cov_0.879310_g7792_i0 PRJEB11523 7870 165 0.87931 1.4508615 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 69.3 2.24e-12   NR HEX9611441.1 2448054 g7792 i0 49.1 1.94545454545455 53 27 96.4 0 5 163 5 57 HEX9611441.1 class I SAM-dependent methyltransferase [Gemmatimonadales bacterium] diamond 321 69.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
32214141 32214141 PRJEB11523_P_NODE_5838_length_191_cov_6.915493_g5760_i0 PRJEB11523 5838 191 6.915493 13.20859163 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 42 0.0206   NR HLB37476.1 2448054 g5760 i0 42.6 0.738219895287958 47 25 73.8 1 148 8 16 60 HLB37476.1 hypothetical protein [Gemmatimonadales bacterium] diamond 141 42 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;