RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB11523", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 2 ✖

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJEB11523 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3533171 3533171 PRJEB11523_P_NODE_8743_length_160_cov_2.063063_g8665_i0 PRJEB11523 8743 160 2.063063 3.3009008 root 1 Root_unresolved Root_unresolved 89.8 1.01e-13   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g8665 i0 84.211 59.36875 95 11 59 1 3 97 2606 2516 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 9499 89.8 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
16590627 16590627 PRJEB11523_P_NODE_5734_length_194_cov_1.406897_g5656_i0 PRJEB11523 5734 194 1.406897 2.72938018 Hyalosphenia papilio 318532 Tubulinea other_Eukaryota 359 8.809999999999999e-95   NTclustered gi|421976353|gb|JQ519493.1| 318532 g5656 i0 100 17.9690721649485 194 0 100 0 1 194 306 499 Hyalosphenia papilio clone JG11.46_f5 elongation factor 2 alpha gene, partial cds blastn 3486 359 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Hyalospheniidae Hyalosphenia Hyalosphenia papilio

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;