RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJEB10320" and tax_phylum = "Spirochaetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJEB10320 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13490 13490 PRJEB10320_P_NODE_11101_length_290_cov_1.411765_g10843_i0 PRJEB10320 11101 290 1.411765 4.0941185 Pseudomonadati 3379134 Bacteria Bacteria 167 1.2399999999999998e-47   NR MCB1189496.1 2026757 g10843 i0 82.3 19.7068965517241 96 17 99.3 0 1 288 331 426 MCB1189496.1 adenosylhomocysteinase [Leptospiraceae bacterium] diamond 5715 167 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae   Leptospiraceae bacterium
11185801 11185801 PRJEB10320_P_NODE_26649_length_157_cov_1.303279_g26391_i0 PRJEB10320 26649 157 1.303279 2.04614803 Treponema 157 Bacteria Bacteria 121 3.5e-23   NTclustered gi|1996291085|gb|CP027017.1| 58231 g26391 i0 81.944 26.8853503184713 144 25 92 1 14 157 1015399 1015257 Treponema medium strain T19 chromosome, complete genome blastn 4221 121 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema medium
15315723 15315723 PRJEB10320_P_NODE_13793_length_250_cov_1.627907_g13535_i0 PRJEB10320 13793 250 1.627907 4.0697675 Spirochaeta aurantia 147 Bacteria Bacteria 143 1.31e-29   NTclustered gi|47779237|gb|AY599019.1| 555314 g13535 i0 84.768 58.264 151 13 58 10 50 195 2249 2104 Spirochaeta aurantia strain M1 16S ribosomal RNA, tRNA-Ile, 23S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence blastn 14566 143 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae Spirochaeta Spirochaeta aurantia
26994727 26994727 PRJEB10320_P_NODE_28222_length_151_cov_1.724138_g27964_i0 PRJEB10320 28222 151 1.724138 2.60344838 Pseudomonadati 3379134 Bacteria Bacteria 45.1 0.00131   NR WP_014802758.1 29510 g27964 i0 50 1.60927152317881 40 19 77.5 1 17 133 63 102 WP_014802758.1 SET domain-containing protein [Turneriella parva] diamond 243 45.1 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Turneriella Turneriella parva
27095870 27095870 PRJEB10320_P_NODE_16882_length_217_cov_1.538462_g16624_i0 PRJEB10320 16882 217 1.538462 3.33846254 Spirochaetia bacterium 2053615 Bacteria Bacteria 54.3 1.86e-6   NR HTH14570.1 2053615 g16624 i0 46.4 0.774193548387097 56 28 77.4 1 20 187 82 135 HTH14570.1 arylamine N-acetyltransferase [Spirochaetia bacterium] diamond 168 54.3 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia       Spirochaetia bacterium
31012182 31012182 PRJEB10320_P_NODE_13795_length_250_cov_1.525581_g13537_i0 PRJEB10320 13795 250 1.525581 3.8139525 Leptospira licerasiae 447106 Bacteria Bacteria 77.8 1.67e-14   NR WP_008591672.1 447106 g13537 i0 61 2.988 59 23 70.8 0 72 248 236 294 WP_008591672.1 cytochrome P450 [Leptospira licerasiae] diamond 747 77.8 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira licerasiae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;