RNAquarium Metadata Server
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contig_metadata

37 rows where bioproject = "PRJEB10320", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 37 ✖

tax_phylum 1

  • Myxococcota · 37 ✖

tax_kingdom 1

bioproject 1

  • PRJEB10320 · 37 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3839713 3839713 PRJEB10320_P_NODE_22184_length_179_cov_1.111111_g21926_i0 PRJEB10320 22184 179 1.111111 1.98888869 Chondromyces crocatus 52 Bacteria Bacteria 206 1.0999999999999999e-48   NTclustered gi|169977285|emb|AM946600.1| 52 g21926 i0 88.571 101.558659217877 175 13 96 5 7 177 1579 1408 Chondromyces crocatus ajudazol biosynthesis gene cluster, strain Cmc5 blastn 18179 206 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Chondromyces Chondromyces crocatus
6391734 6391734 PRJEB10320_P_NODE_8386_length_348_cov_1.118211_g8128_i0 PRJEB10320 8386 348 1.118211 3.89137428 Pseudomonadati 3379134 Bacteria Bacteria 103 3.2199999999999993e-24   NR MEK7880889.1 2026735 g8128 i0 47.4 3.00862068965517 116 54 99.1 5 2 346 35 144 MEK7880889.1 carbonic anhydrase [Deltaproteobacteria bacterium] diamond 1047 103 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
8940463 8940463 PRJEB10320_P_NODE_12268_length_271_cov_1.008475_g12010_i0 PRJEB10320 12268 271 1.008475 2.73296725 Minicystis rosea 888845 Bacteria Bacteria 56.5 0.002   NTclustered gi|1127353251|gb|CP016211.1| 888845 g12010 i0 92.683 0.151291512915129 41 0 14 3 101 138 8942056 8942096 Minicystis rosea strain DSM 24000 chromosome, complete genome blastn 41 56.5 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Minicystis Minicystis rosea
15315730 15315730 PRJEB10320_P_NODE_1513_length_855_cov_5.060976_g1356_i0 PRJEB10320 1513 855 5.060976 43.2713448 Kofleriaceae bacterium 2212474 Bacteria Bacteria 191 6.939999999999999e-57   NR HPH68303.1 2212474 g1356 i0 51.3 2.7859649122807 191 89 66.7 3 60 629 5 192 HPH68303.1 hypothetical protein [Kofleriaceae bacterium] diamond 2382 191 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
26937667 26937667 PRJEB10320_P_NODE_21682_length_182_cov_1.204082_g21424_i0 PRJEB10320 21682 182 1.204082 2.19142924 Kofleriaceae bacterium 2212474 Bacteria Bacteria 42 0.0312   NR HLU66281.1 2212474 g21424 i0 44.7 0.774725274725275 47 26 77.5 0 180 40 236 282 HLU66281.1 long-chain fatty acid--CoA ligase [Kofleriaceae bacterium] diamond 141 42 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
26994726 26994726 PRJEB10320_P_NODE_23182_length_173_cov_1.427536_g22924_i0 PRJEB10320 23182 173 1.427536 2.46963728 Archangiaceae 39 Bacteria Bacteria 95.5 3.75e-21   NR WP_083967961.1 394096 g22924 i0 77.8 8.51445086705202 54 12 93.6 0 3 164 580 633 WP_083967961.1 peptidoglycan-binding protein [Hyalangium minutum] diamond 1473 95.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Hyalangium Hyalangium minutum
27190646 27190646 PRJEB10320_P_NODE_14222_length_245_cov_1.033333_g13964_i0 PRJEB10320 14222 245 1.033333 2.53166585 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 44.7 0.00811   NR MBM4345754.1 2026735 g13964 i0 37.7 2.16734693877551 69 40 80.8 1 232 35 514 582 MBM4345754.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 531 44.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27190649 27190649 PRJEB10320_P_NODE_18802_length_201_cov_1.680723_g18544_i0 PRJEB10320 18802 201 1.680723 3.37825323 Kofleriaceae bacterium 2212474 Bacteria Bacteria 59.7 2.22e-9   NR KAB2892992.1 2212474 g18544 i0 59.3 0.805970149253731 54 22 80.6 0 12 173 1 54 KAB2892992.1 MAG: hypothetical protein F9K40_17510 [Kofleriaceae bacterium] diamond 162 59.7 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
27222150 27222150 PRJEB10320_P_NODE_1223_length_929_cov_6.024609_g1084_i0 PRJEB10320 1223 929 6.024609 55.96861761 Myxococcaceae bacterium 2484252 Bacteria Bacteria 204 1.28e-61   NR HLT31923.1 2484252 g1084 i0 51.5 1.98923573735199 204 96 65.9 2 863 252 2 202 HLT31923.1 glutathione binding-like protein [Myxococcaceae bacterium] diamond 1848 204 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
27349047 27349047 PRJEB10320_P_NODE_20563_length_189_cov_1.071429_g20305_i0 PRJEB10320 20563 189 1.071429 2.02500081 Kofleriaceae bacterium 2212474 Bacteria Bacteria 44.3 0.0027   NR HTR52097.1 2212474 g20305 i0 61.3 0.492063492063492 31 12 49.2 0 172 80 39 69 HTR52097.1 hypothetical protein [Kofleriaceae bacterium] diamond 93 44.3 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
27500768 27500768 PRJEB10320_P_NODE_26143_length_159_cov_1.282258_g25885_i0 PRJEB10320 26143 159 1.282258 2.03879022 Bacteria 2 Bacteria Bacteria 59.3 1.65e-8   NR MCC7536217.1 2026735 g25885 i0 50 2.94339622641509 52 26 98.1 0 2 157 522 573 MCC7536217.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 468 59.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27664764 27664764 PRJEB10320_P_NODE_11304_length_286_cov_1.613546_g11046_i0 PRJEB10320 11304 286 1.613546 4.61474156 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 70.9 7.79e-12   NR MBM4354009.1 2026735 g11046 i0 50.5 0.975524475524476 93 43 94.4 1 15 284 314 406 MBM4354009.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 279 70.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27917048 27917048 PRJEB10320_P_NODE_24645_length_166_cov_0.885496_g24387_i0 PRJEB10320 24645 166 0.885496 1.46992336 Haliangium sp. 2663208 Bacteria Bacteria 70.9 1.6e-12   NR HWN71616.1 2663208 g24387 i0 52.7 1.98795180722892 55 25 99.4 1 165 1 517 570 HWN71616.1 lysyl oxidase family protein [Haliangium sp.] diamond 330 70.9 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae Haliangium Haliangium sp.
28163766 28163766 PRJEB10320_P_NODE_8665_length_340_cov_1.524590_g8407_i0 PRJEB10320 8665 340 1.52459 5.183606 Bacteria 2 Bacteria Bacteria 49.7 3.76e-4   NR WP_143076215.1 83460 g8407 i0 40.6 2.31176470588235 64 29 48.5 3 339 175 153 216 WP_143076215.1 hypothetical protein [Stigmatella erecta] diamond 786 49.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Stigmatella Stigmatella erecta
28548875 28548875 PRJEB10320_P_NODE_587_length_1261_cov_3.823002_g489_i0 PRJEB10320 587 1261 3.823002 48.20805522 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 97.8 1.4e-17   NR MBM4344054.1 2026735 g489 i0 26 1.00634417129262 423 233 87.3 18 1232 132 448 846 MBM4344054.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 1269 97.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28643547 28643547 PRJEB10320_P_NODE_13707_length_251_cov_1.504630_g13449_i0 PRJEB10320 13707 251 1.50463 3.7766213 Myxococcales bacterium SG8_38 1703407 Bacteria Bacteria 45.4 0.00438   NR KPK14690.1 1703407 g13449 i0 38.9 1.86454183266932 72 38 83.7 3 223 14 154 221 KPK14690.1 MAG: hypothetical protein AMJ62_12250 [Myxococcales bacterium SG8_38] diamond 468 45.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium SG8_38
28706640 28706640 PRJEB10320_P_NODE_20807_length_187_cov_1.809211_g20549_i0 PRJEB10320 20807 187 1.809211 3.38322457 Myxococcales bacterium 2026763 Bacteria Bacteria 72.8 4.6e-13   NR RYZ04745.1 2026763 g20549 i0 51.6 0.994652406417112 62 30 99.5 0 187 2 3813 3874 RYZ04745.1 MAG: tetratricopeptide repeat protein [Myxococcales bacterium] diamond 186 72.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
28738128 28738128 PRJEB10320_P_NODE_11967_length_275_cov_2.433333_g11709_i0 PRJEB10320 11967 275 2.433333 6.69166575 Kofleriaceae bacterium 2212474 Bacteria Bacteria 80.1 3.4e-16   NR HPH68303.1 2212474 g11709 i0 73.1 1.17818181818182 52 14 56.7 0 157 2 5 56 HPH68303.1 hypothetical protein [Kofleriaceae bacterium] diamond 324 80.1 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
28769633 28769633 PRJEB10320_P_NODE_467_length_1371_cov_2.722305_g375_i0 PRJEB10320 467 1371 2.722305 37.32280155 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 53.9 0.00168   NR MCB9739587.1 2026735 g375 i0 32.4 0.229759299781182 105 58 21 3 76 363 955 1055 MCB9739587.1 SUMF1/EgtB/PvdO family nonheme iron enzyme [Deltaproteobacteria bacterium] diamond 315 53.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29180321 29180321 PRJEB10320_P_NODE_1129_length_965_cov_2.530108_g375_i1 PRJEB10320 1129 965 2.530108 24.4155422 Sandaracinus sp. 2024858 Bacteria Bacteria 52 0.0032   NR MFO0711607.1 2024858 g375 i1 40.3 1.52331606217617 67 36 20.2 2 848 654 666 730 MFO0711607.1 hypothetical protein [Sandaracinus sp.] diamond 1470 52 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae Sandaracinus Sandaracinus sp.
29300353 29300353 PRJEB10320_P_NODE_16029_length_225_cov_1.042105_g15771_i0 PRJEB10320 16029 225 1.042105 2.34473625 Bacteria 2 Bacteria Bacteria 49.7 1.05e-4   NR MBM4345754.1 2026735 g15771 i0 40.9 5.92 66 34 82.7 3 38 223 506 570 MBM4345754.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 1332 50.1 0.992015968063872 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29463890 29463890 PRJEB10320_P_NODE_23350_length_172_cov_1.459854_g23092_i0 PRJEB10320 23350 172 1.459854 2.51094888 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 51.6 1.09e-5   NR MCB9789020.1 2026735 g23092 i0 49 0.88953488372093 51 22 82 2 153 13 167 217 MCB9789020.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 153 51.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29653374 29653374 PRJEB10320_P_NODE_10870_length_294_cov_1.216216_g10612_i0 PRJEB10320 10870 294 1.216216 3.57567504 Minicystis sp. 1971901 Bacteria Bacteria 67.8 5.49e-11   NR MFT3769745.1 1971901 g10612 i0 46.3 1.44897959183673 67 34 66.3 1 67 261 4 70 MFT3769745.1 hypothetical protein [Minicystis sp.] diamond 426 67.8 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Minicystis Minicystis sp.
29716623 29716623 PRJEB10320_P_NODE_19150_length_198_cov_2.631902_g18892_i0 PRJEB10320 19150 198 2.631902 5.21116596 Myxococcaceae bacterium 2484252 Bacteria Bacteria 66.2 3.46e-11   NR MBX5480718.1 2484252 g18892 i0 73.2 3.98484848484848 41 11 62.1 0 197 75 177 217 MBX5480718.1 metallophosphoesterase [Myxococcaceae bacterium] diamond 789 66.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
29969514 29969514 PRJEB10320_P_NODE_28711_length_150_cov_1.000000_g28453_i0 PRJEB10320 28711 150 1 1.5 Polyangium sp. 3409587 Bacteria Bacteria 52.4 3.5e-6   NR HRI67821.1 57 g28453 i0 47.8 3.24 46 22 92 1 7 144 2 45 HRI67821.1 lysyl oxidase family protein [Polyangium sp.] diamond 486 52.4 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Polyangium Polyangium sp.
30184555 30184555 PRJEB10320_P_NODE_19092_length_199_cov_1.365854_g18834_i0 PRJEB10320 19092 199 1.365854 2.71804946 Pseudomonadati 3379134 Bacteria Bacteria 48.1 2.66e-4   NR MBM4255762.1 2026735 g18834 i0 60 3.58793969849246 40 16 60.3 0 2 121 865 904 MBM4255762.1 leucine--tRNA ligase [Deltaproteobacteria bacterium] diamond 714 48.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30254183 30254183 PRJEB10320_P_NODE_27912_length_152_cov_1.709402_g27654_i0 PRJEB10320 27912 152 1.709402 2.59829104 Chondromyces apiculatus 51 Bacteria Bacteria 79 3.75e-16   NR WP_044240837.1 51 g27654 i0 79.6 2.92105263157895 49 10 96.7 0 152 6 115 163 WP_044240837.1 SDR family oxidoreductase [Chondromyces apiculatus] diamond 444 79 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Chondromyces Chondromyces apiculatus
30475204 30475204 PRJEB10320_P_NODE_25253_length_163_cov_0.945312_g24995_i0 PRJEB10320 25253 163 0.945312 1.54085856 Archangium sp. 1872627 Bacteria Bacteria 42.4 0.0169   NR MDP1829550.1 1872627 g24995 i0 42.6 0.993865030674847 54 28 93.9 2 9 161 62 115 MDP1829550.1 phospholipid carrier-dependent glycosyltransferase [Archangium sp.] diamond 162 42.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium sp.
30664647 30664647 PRJEB10320_P_NODE_27333_length_154_cov_1.680672_g27075_i0 PRJEB10320 27333 154 1.680672 2.58823488 Nannocystis pusilla 889268 Bacteria Bacteria 55.5 3.63e-7   NR WP_267772316.1 889268 g27075 i0 52.3 1.71428571428571 44 21 85.7 0 135 4 665 708 WP_267772316.1 LamG-like jellyroll fold domain-containing protein [Nannocystis pusilla] diamond 264 55.5 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis pusilla
31360106 31360106 PRJEB10320_P_NODE_9416_length_322_cov_2.097561_g9158_i0 PRJEB10320 9416 322 2.097561 6.75414642 Minicystis sp. 1971901 Bacteria Bacteria 63.5 2.73e-9   NR MFT3769745.1 1971901 g9158 i0 46.9 0.596273291925466 64 32 57.8 1 133 318 4 67 MFT3769745.1 hypothetical protein [Minicystis sp.] diamond 192 63.5 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Minicystis Minicystis sp.
31581474 31581474 PRJEB10320_P_NODE_10996_length_292_cov_1.093385_g10738_i0 PRJEB10320 10996 292 1.093385 3.1926842 Kofleriaceae bacterium 2212474 Bacteria Bacteria 51.6 4.17e-5   NR MDX2092691.1 2212474 g10738 i0 33.3 0.770547945205479 75 47 77.1 1 64 288 112 183 MDX2092691.1 alpha/beta hydrolase [Kofleriaceae bacterium] diamond 225 51.6 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
32144694 32144694 PRJEB10320_P_NODE_3038_length_616_cov_2.332186_g2825_i0 PRJEB10320 3038 616 2.332186 14.36626576 Bacteria 2 Bacteria Bacteria 79 4.13e-13   NR MBM4371516.1 2026735 g2825 i0 32.7 4.14448051948052 150 86 73.1 4 462 13 486 620 MBM4371516.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 2553 79.3 0.996216897856242 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32403980 32403980 PRJEB10320_P_NODE_14099_length_246_cov_2.037915_g13841_i0 PRJEB10320 14099 246 2.037915 5.0132709 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 45.4 0.00433   NR MBM4345644.1 2026735 g13841 i0 60.7 0.646341463414634 28 11 34.1 0 245 162 898 925 MBM4345644.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 159 45.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32467447 32467447 PRJEB10320_P_NODE_26439_length_158_cov_0.975610_g26181_i0 PRJEB10320 26439 158 0.97561 1.5414638 Myxococcales bacterium 2026763 Bacteria Bacteria 48.9 7.71e-5   NR MBT9560951.1 2026763 g26181 i0 52.2 0.873417721518987 46 19 87.3 2 21 158 219 261 MBT9560951.1 hypothetical protein [Myxococcales bacterium] diamond 138 48.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
32562363 32562363 PRJEB10320_P_NODE_19219_length_198_cov_1.472393_g18961_i0 PRJEB10320 19219 198 1.472393 2.91533814 Chondromyces crocatus 52 Bacteria Bacteria 73.6 2.74e-13   NR WP_050430668.1 52 g18961 i0 60.7 0.924242424242424 61 24 92.4 0 196 14 368 428 WP_050430668.1 S8 family peptidase [Chondromyces crocatus] diamond 183 73.6 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Chondromyces Chondromyces crocatus
32782350 32782350 PRJEB10320_P_NODE_4560_length_499_cov_3.875000_g4323_i0 PRJEB10320 4560 499 3.875 19.33625 Myxococcota bacterium 2818507 Bacteria Bacteria 49.3 0.00233   NR HOI11078.1 2818507 g4323 i0 36.7 0.6312625250501 79 45 45.1 2 2 226 7 84 HOI11078.1 hypothetical protein [Myxococcota bacterium] diamond 315 49.3 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
32782357 32782357 PRJEB10320_P_NODE_9940_length_311_cov_2.449275_g9682_i0 PRJEB10320 9940 311 2.449275 7.61724525 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 57.4 6.04e-7   NR MBI5611060.1 2026735 g9682 i0 34.3 0.983922829581994 102 52 97.4 3 311 9 408 495 MBI5611060.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 306 57.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;