RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB10320" and tax_phylum = "Foraminifera"

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tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB10320 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16590428 16590428 PRJEB10320_P_NODE_27394_length_154_cov_1.344538_g27136_i0 PRJEB10320 27394 154 1.344538 2.07058852 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 88.6 7.89e-19   NR ETO17068.1 46433 g27136 i0 78.4 4.88961038961039 51 11 99.4 0 1 153 166 216 ETO17068.1 hypothetical protein RFI_20264 [Reticulomyxa filosa] diamond 753 88.6 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
20414132 20414132 PRJEB10320_P_NODE_16397_length_221_cov_2.338710_g16139_i0 PRJEB10320 16397 221 2.33871 5.1685491 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 94 1.52e-20   NR ETO09453.1 46433 g16139 i0 69 6.7737556561086 71 19 96.4 2 218 6 214 281 ETO09453.1 hypothetical protein RFI_27925 [Reticulomyxa filosa] diamond 1497 94 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
28643558 28643558 PRJEB10320_P_NODE_25887_length_160_cov_1.280000_g25629_i0 PRJEB10320 25887 160 1.28 2.048 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 45.4 0.00137   NR ETO09431.1 46433 g25629 i0 55.6 2.38125 36 16 67.5 0 112 5 218 253 ETO09431.1 hypothetical protein RFI_27944 [Reticulomyxa filosa] diamond 381 45.4 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;