RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJEB10320", tax_kingdom = "Fungi" and tax_phylum = "Cryptomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Cryptomycota · 3 ✖

tax_kingdom 1

  • Fungi · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB10320 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12767055 12767055 PRJEB10320_P_NODE_14271_length_244_cov_1.559809_g14013_i0 PRJEB10320 14271 244 1.559809 3.80593396 root 1 Root_unresolved Root_unresolved 131 1.61e-36   NR EPZ33870.1 988480 g14013 i0 70.4 4.95491803278689 81 24 99.6 0 244 2 26 106 EPZ33870.1 60S ribosomal protein L13a [Rozella allomycis CSF55] diamond 1209 132 0.992424242424242 Eukaryota Opisthokonta Fungi Cryptomycota       Rozella Rozella allomycis
29117173 29117173 PRJEB10320_P_NODE_21189_length_185_cov_1.060000_g20931_i0 PRJEB10320 21189 185 1.06 1.961 Paramicrosporidium saccamoebae 1246581 Fungi Fungi 53.9 1.95e-6   NR PJF19671.1 1246581 g20931 i0 41.7 0.972972972972973 60 30 97.3 1 1 180 420 474 PJF19671.1 Integral membrane protein [Paramicrosporidium saccamoebae] diamond 180 53.9 1 Eukaryota Opisthokonta Fungi Cryptomycota       Paramicrosporidium Paramicrosporidium saccamoebae
32119253 32119253 PRJEB10320_P_NODE_19538_length_196_cov_1.304348_g19280_i0 PRJEB10320 19538 196 1.304348 2.55652208 Paramicrosporidium saccamoebae 1246581 Fungi Fungi 46.6 2.34e-4   NR PJF18805.1 1246581 g19280 i0 65.7 0.535714285714286 35 12 53.6 0 1 105 63 97 PJF18805.1 40S ribosomal protein S24 [Paramicrosporidium saccamoebae] diamond 105 46.6 1 Eukaryota Opisthokonta Fungi Cryptomycota       Paramicrosporidium Paramicrosporidium saccamoebae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;