RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

14 rows where bioproject = "PRJEB10320", tax_clade = "Sar" and tax_phylum = "Endomyxa"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 14 ✖

tax_clade 1

  • Sar · 14 ✖

bioproject 1

  • PRJEB10320 · 14 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1287815 1287815 PRJEB10320_P_NODE_25022_length_164_cov_1.232558_g24764_i0 PRJEB10320 25022 164 1.232558 2.02139512 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 202 1.28e-47   NTclustered gi|157887508|emb|AM411665.1| 37360 g24764 i0 89.375 92.2682926829268 160 17 98 0 1 160 1737 1578 Plasmodiophora brassicae beta tub gene for beta tubulin, clone PbBTUB blastn 15132 202 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
2563395 2563395 PRJEB10320_P_NODE_16683_length_219_cov_1.304348_g16425_i0 PRJEB10320 16683 219 1.304348 2.85652212 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 102 1.15e-24   NR CEP00157.1 37360 g16425 i0 67.1 1 73 24 100 0 219 1 24 96 CEP00157.1 hypothetical protein PBRA_007891 [Plasmodiophora brassicae] diamond 219 102 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
2563421 2563421 PRJEB10320_P_NODE_23943_length_169_cov_1.194030_g23685_i0 PRJEB10320 23943 169 1.19403 2.0179107 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 85.5 3.96e-19   NR CEO94913.1 37360 g23685 i0 69.6 11.9289940828402 56 17 99.4 0 1 168 112 167 CEO94913.1 hypothetical protein PBRA_003726 [Plasmodiophora brassicae] diamond 2016 85.9 0.9953434225844 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
19139081 19139081 PRJEB10320_P_NODE_6216_length_418_cov_1.806789_g5964_i0 PRJEB10320 6216 418 1.806789 7.55237802 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 154 3.25e-44   NR CEO98592.1 37360 g5964 i0 63.7 1.50717703349282 113 41 81.1 0 416 78 101 213 CEO98592.1 hypothetical protein PBRA_006706 [Plasmodiophora brassicae] diamond 630 154 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
27854000 27854000 PRJEB10320_P_NODE_20005_length_193_cov_1.012658_g19747_i0 PRJEB10320 20005 193 1.012658 1.95442994 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 56.2 4.89e-8   NR CEO97729.1 37360 g19747 i0 41 1.86528497409326 61 35 94.8 1 184 2 43 102 CEO97729.1 hypothetical protein PBRA_005843 [Plasmodiophora brassicae] diamond 360 56.2 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
28832760 28832760 PRJEB10320_P_NODE_15388_length_231_cov_1.831633_g15130_i0 PRJEB10320 15388 231 1.831633 4.23107223 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 78.6 7.47e-15   NR CEP03425.1 37360 g15130 i0 54.7 1.85714285714286 75 33 97.4 1 2 226 145 218 CEP03425.1 hypothetical protein PBRA_003185 [Plasmodiophora brassicae] diamond 429 78.6 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
28895845 28895845 PRJEB10320_P_NODE_928_length_1047_cov_3.978261_g806_i0 PRJEB10320 928 1047 3.978261 41.65239267 Bonamia ostreae 126728 SAR_Eukaryotes SAR_Eukaryotes 75.9 1.61e-11   NR MES1919628.1 126728 g806 i0 32.2 0.851002865329513 149 82 37.8 3 564 959 132 278 MES1919628.1 hypothetical protein [Bonamia ostreae] diamond 891 75.9 1 Eukaryota Sar   Endomyxa Ascetosporea Haplosporida   Bonamia Bonamia ostreae
29527538 29527538 PRJEB10320_P_NODE_8550_length_343_cov_1.457792_g8292_i0 PRJEB10320 8550 343 1.457792 5.00022656 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 53.1 2.7e-5   NR SPQ99088.1 37360 g8292 i0 37.9 1.89795918367347 58 36 50.7 0 342 169 151 208 SPQ99088.1 unnamed protein product [Plasmodiophora brassicae] diamond 651 53.1 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
29558921 29558921 PRJEB10320_P_NODE_22770_length_175_cov_1.735714_g22512_i0 PRJEB10320 22770 175 1.735714 3.0374995 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 67 2.48e-11   NR CEO95994.1 37360 g22512 i0 55.2 1.98857142857143 58 26 99.4 0 1 174 151 208 CEO95994.1 hypothetical protein PBRA_004684 [Plasmodiophora brassicae] diamond 348 67 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30917562 30917562 PRJEB10320_P_NODE_14234_length_244_cov_3.028708_g13976_i0 PRJEB10320 14234 244 3.028708 7.39004752 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 63.5 2.41e-11   NR CEO98595.1 37360 g13976 i0 63.5 0.639344262295082 52 19 63.9 0 218 63 1 52 CEO98595.1 hypothetical protein PBRA_006708 [Plasmodiophora brassicae] diamond 156 63.5 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32119247 32119247 PRJEB10320_P_NODE_15438_length_231_cov_1.142857_g15180_i0 PRJEB10320 15438 231 1.142857 2.63999967 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 50.8 3.95e-5   NR CEP03257.1 37360 g15180 i0 38.6 0.909090909090909 70 27 89.6 3 208 2 209 263 CEP03257.1 hypothetical protein PBRA_003017 [Plasmodiophora brassicae] diamond 210 50.8 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32150831 32150831 PRJEB10320_P_NODE_7718_length_366_cov_1.679758_g7462_i0 PRJEB10320 7718 366 1.679758 6.14791428 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 125 1.89e-32   NR CEP03742.1 37360 g7462 i0 51.2 2.01639344262295 123 59 100 1 1 366 76 198 CEP03742.1 hypothetical protein PBRA_003349 [Plasmodiophora brassicae] diamond 738 125 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32751070 32751070 PRJEB10320_P_NODE_18080_length_207_cov_0.924419_g17822_i0 PRJEB10320 18080 207 0.924419 1.91354733 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 46.2 3.58e-4   NR CEO96223.1 37360 g17822 i0 47.2 0.521739130434783 36 19 52.2 0 207 100 80 115 CEO96223.1 hypothetical protein PBRA_004894 [Plasmodiophora brassicae] diamond 108 46.2 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32876922 32876922 PRJEB10320_P_NODE_20140_length_192_cov_1.242038_g19882_i0 PRJEB10320 20140 192 1.242038 2.38471296 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 80.9 1.56e-17   NR CEO99081.1 37360 g19882 i0 60.4 0.828125 53 21 82.8 0 5 163 91 143 CEO99081.1 hypothetical protein PBRA_007195 [Plasmodiophora brassicae] diamond 159 80.9 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;