RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJEB10140" and tax_phylum = "Vulcanimicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Vulcanimicrobiota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB10140 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16589452 16589452 PRJEB10140_P_NODE_258894_length_167_cov_0.881356_g241585_i0 PRJEB10140 258894 167 0.881356 1.47186452 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 195 2.2e-45   NTclustered gi|2874253824|emb|OY969808.1| 3107663 g241585 i0 87.879 2.97005988023952 165 20 99 0 3 167 1070479 1070643 MAG: Candidatus Eremiobacteraeota bacterium isolate MFD04463.bin.c.1 genome assembly, chromosome: 1 blastn 496 195 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
27569704 27569704 PRJEB10140_P_NODE_226224_length_179_cov_1.523077_g208915_i0 PRJEB10140 226224 179 1.523077 2.72630783 Candidatus Eremiobacteraceae bacterium 3069296 Bacteria Bacteria 41.6 0.0403   NR HEY5093793.1 3069296 g208915 i0 44.4 0.754189944134078 45 24 75.4 1 157 23 123 166 HEY5093793.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Candidatus Eremiobacteraceae bacterium] diamond 135 41.6 1 Bacteria   Bacillati Vulcanimicrobiota Vulcanimicrobiia Candidatus Eremiobacterales Candidatus Eremiobacteraceae   Candidatus Eremiobacteraceae bacterium
29558841 29558841 PRJEB10140_P_NODE_291650_length_162_cov_0.911504_g274341_i0 PRJEB10140 291650 162 0.911504 1.47663648 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 73.2 3.63e-14   NR MFA5505429.1 3107663 g274341 i0 66 0.981481481481482 53 18 98.1 0 162 4 42 94 MFA5505429.1 lysophospholipid acyltransferase family protein [Vulcanimicrobiota bacterium] diamond 159 73.2 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;