RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB10140" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB10140 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7665636 7665636 PRJEB10140_P_NODE_80347_length_456_cov_3.626536_g63095_i0 PRJEB10140 80347 456 3.626536 16.53700416 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 235 1.77e-76   NR XP_068353965.1 1144522 g63095 i0 74.5 12.2434210526316 157 35 100 1 1 456 26 182 XP_068353965.1 Peptidyl-prolyl cis-trans isomerase CYP19-4 [Tritrichomonas foetus] diamond 5583 235 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
26715604 26715604 PRJEB10140_P_NODE_126121_length_290_cov_3.601660_g108814_i0 PRJEB10140 126121 290 3.60166 10.444814 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 73.2 9.45e-13   NR XP_001317006.1 412133 g108814 i0 37.5 3.65172413793103 88 50 91 1 288 25 84 166 XP_001317006.1 protein serine/threonine kinase protein [Trichomonas vaginalis G3] diamond 1059 73.2 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
30696106 30696106 PRJEB10140_P_NODE_55474_length_661_cov_2.893791_g39138_i0 PRJEB10140 55474 661 2.893791 19.12795851 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 94 2.08e-19   NR XP_068360986.1 1144522 g39138 i0 36.3 0.712556732223903 157 74 69 7 177 632 102 237 XP_068360986.1 uncharacterized protein TRFO_23795 [Tritrichomonas foetus] diamond 471 94 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;