RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJEB10140", tax_kingdom = "Thermotogati" and tax_phylum = "Thermotogota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Thermotogota · 3 ✖

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJEB10140 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29180142 29180142 PRJEB10140_P_NODE_110249_length_331_cov_1.567376_g92944_i0 PRJEB10140 110249 331 1.567376 5.18801456 Thermotoga sp. 4484_232 1968524 Bacteria Bacteria 58.5 2.83e-8   NR OQX56788.1 1968524 g92944 i0 53.8 0.471299093655589 52 22 47.1 1 326 171 74 123 OQX56788.1 MAG: glycine cleavage system protein H [Thermotoga sp. 4484_232] diamond 156 58.5 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Thermotogaceae Thermotoga Thermotoga sp. 4484_232
30317486 30317486 PRJEB10140_P_NODE_159152_length_235_cov_1.580645_g141844_i0 PRJEB10140 159152 235 1.580645 3.71451575 Mesotoga prima 1184387 Bacteria Bacteria 43.9 0.0126   NR WP_324316300.1 1184387 g141844 i0 40.7 1.34042553191489 54 32 68.9 0 72 233 7 60 WP_324316300.1 serine hydrolase [Mesotoga prima] diamond 315 43.9 1 Bacteria   Thermotogati Thermotogota Thermotogae Kosmotogales Kosmotogaceae Mesotoga Mesotoga prima
30349142 30349142 PRJEB10140_P_NODE_259852_length_167_cov_0.864407_g242543_i0 PRJEB10140 259852 167 0.864407 1.44355969 Marinitoga aeolica 2809031 Bacteria Bacteria 51.6 4.73e-6   NR WP_280997589.1 2809031 g242543 i0 50.9 4.86826347305389 55 24 98.8 2 165 1 90 141 WP_280997589.1 macro domain-containing protein [Marinitoga aeolica] diamond 813 51.6 1 Bacteria   Thermotogati Thermotogota Thermotogae Petrotogales Petrotogaceae Marinitoga Marinitoga aeolica

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;