RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJEB10140", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJEB10140 · 3 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30001146 30001146 PRJEB10140_P_NODE_143651_length_257_cov_1.442308_g126343_i0 PRJEB10140 143651 257 1.442308 3.70673156 Deltaproteobacteria bacterium HGW-Deltaproteobacteria-19 2013746 Bacteria Bacteria 44.7 0.00843   NR PKN34932.1 2013746 g126343 i0 39.1 1.59922178988327 69 28 75.9 3 196 2 159 217 PKN34932.1 MAG: formate dehydrogenase accessory protein FdhE [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-19] diamond 411 44.7 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-19
30632763 30632763 PRJEB10140_P_NODE_233033_length_175_cov_1.603175_g215724_i0 PRJEB10140 233033 175 1.603175 2.80555625 SAR324 cluster bacterium 2024889 Bacteria Bacteria 59.3 2.05e-8   NR MEY8217454.1 2024889 g215724 i0 54 0.857142857142857 50 23 85.7 0 173 24 195 244 MEY8217454.1 hypothetical protein [SAR324 cluster bacterium] diamond 150 59.3 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
31480629 31480629 PRJEB10140_P_NODE_85996_length_426_cov_1.647215_g68722_i0 PRJEB10140 85996 426 1.647215 7.0171359 Actinomycetota 201174 Bacteria Bacteria 172 3.52e-48   NR MEE2717496.1 2024889 g68722 i0 59.7 11.7112676056338 139 54 96.5 1 426 16 321 459 MEE2717496.1 4-coumarate--CoA ligase family protein [SAR324 cluster bacterium] diamond 4989 172 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;