RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB10140", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 4 ✖

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJEB10140 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21689900 21689900 PRJEB10140_P_NODE_60038_length_611_cov_1.202847_g43338_i0 PRJEB10140 60038 611 1.202847 7.34939517 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 233 4.82e-74   NR ABD46560.1 5778 g43338 i0 74.5 0.731587561374795 149 38 73.2 0 610 164 35 183 ABD46560.1 lactate dehydrogenase-like protein, partial [Vermamoeba vermiformis] diamond 447 233 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
28422515 28422515 PRJEB10140_P_NODE_51746_length_706_cov_3.205479_g35795_i0 PRJEB10140 51746 706 3.205479 22.63068174 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 258 5.07e-83   NR AAY21191.1 5778 g35795 i0 58.3 0.998583569405099 235 94 99.9 1 2 706 14 244 AAY21191.1 Rpl7A, partial [Vermamoeba vermiformis] diamond 705 258 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
29331901 29331901 PRJEB10140_P_NODE_50449_length_723_cov_1.412463_g34632_i0 PRJEB10140 50449 723 1.412463 10.21210749 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 98.6 1.71e-20   NR AKN09693.1 5775 g34632 i0 29.8 3.28630705394191 188 123 76.3 2 14 565 67 249 AKN09693.1 metaxin [Amoeba proteus] diamond 2376 99 0.995959595959596 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
29432428 29432428 PRJEB10140_P_NODE_8730_length_2424_cov_3.901474_g4815_i0 PRJEB10140 8730 2424 3.901474 94.57172976 Amoeba proteus 5775 Tubulinea other_Eukaryota 408 2.23e-125   NR AKN09691.1 5775 g4815 i0 47.5 1.03094059405941 833 404 99.6 8 5 2419 54 881 AKN09691.1 Tom70 [Amoeba proteus] diamond 2499 408 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;