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contig_metadata

35 rows where bioproject = "PRJDB9741" and tax_superkingdom = "Archaea"

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tax_kingdom 2

analysis 2

tax_superkingdom 1

  • Archaea · 35 ✖

tax_clade 1

bioproject 1

  • PRJDB9741 · 35 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10858 10858 PRJDB9741_P_NODE_17301_length_182_cov_2.879699_g16984_i0 PRJDB9741 17301 182 2.879699 5.24105218 Methanothrix sp. 90426 Archaea Archaea 326 8.260000000000001e-85   NTclustered gi|2621703957|emb|OY762912.1| 90426 g16984 i0 98.901 228.373626373626 182 2 100 0 1 182 202429 202610 MAG: Methanothrix sp. isolate 80880379-7421-4bc7-b5fd-f9f5169ec620 genome assembly, chromosome: 1 blastn 41564 326 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
11051 11051 PRJDB9741_P_NODE_40981_length_160_cov_2.180180_g40664_i0 PRJDB9741 40981 160 2.18018 3.488288 Methanothrix sp. 90426 Archaea Archaea 285 1.2e-72   NTclustered gi|2621703957|emb|OY762912.1| 90426 g40664 i0 98.75 14.01875 160 2 100 0 1 160 202839 202998 MAG: Methanothrix sp. isolate 80880379-7421-4bc7-b5fd-f9f5169ec620 genome assembly, chromosome: 1 blastn 2243 285 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
2257094 2257094 PRJDB9741_P_NODE_31622_length_165_cov_0.879310_g31305_i0 PRJDB9741 31622 165 0.87931 1.4508615 Candidatus Marsarchaeota archaeon 2823144 Archaea Archaea 72 6e-13   NR MCL4375258.1 2823144 g31305 i0 54.9 0.927272727272727 51 23 92.7 0 2 154 313 363 MCL4375258.1 M1 family metallopeptidase [Candidatus Marsarchaeota archaeon] diamond 153 72 1 Archaea   Thermoproteati Candidatus Marsarchaeota         Candidatus Marsarchaeota archaeon
3532487 3532487 PRJDB9741_P_NODE_31223_length_165_cov_1.517241_g30906_i0 PRJDB9741 31223 165 1.517241 2.50344765 Methanomicrobia 224756 Archaea Archaea 305 9.59e-79   NTclustered gi|66794693|emb|AJ830973.1| 13776 g30906 i0 100 100 165 0 100 0 1 165 346 182 Unidentified archaeon partial 16S rRNA gene, clone 375 blastn 16500 305 1 Archaea               unidentified archaeon
3837143 3837143 PRJDB9741_P_NODE_32124_length_165_cov_0.879310_g31807_i0 PRJDB9741 32124 165 0.87931 1.4508615 Candidatus Methanomethylicus sp. 2282147 Archaea Archaea 105 9.41e-26   NR HRU81615.1 2282147 g31807 i0 89.1 1 55 6 100 0 165 1 80 134 HRU81615.1 thiamine pyrophosphate-dependent enzyme [Candidatus Methanomethylicus sp.] diamond 165 105 1 Archaea   Thermoproteati Thermoproteota Methanosuratincolia Candidatus Methanomethylicales Candidatus Methanomethylicaceae Candidatus Methanomethylicus Candidatus Methanomethylicus sp.
5113326 5113326 PRJDB9741_P_NODE_30745_length_165_cov_2.568966_g30428_i0 PRJDB9741 30745 165 2.568966 4.2387939 Methanothrix sp. 90426 Archaea Archaea 233 4.5899999999999994e-57   NTclustered gi|2626216449|emb|OY821645.1| 90426 g30428 i0 92.121 75.3151515151515 165 13 100 0 1 165 825653 825817 MAG: Methanothrix sp. isolate d1628e35-7b52-4540-a147-c2ca1342adce genome assembly, chromosome: 1 blastn 12427 233 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
8938030 8938030 PRJDB9741_P_NODE_6668_length_243_cov_1.051546_g6351_i0 PRJDB9741 6668 243 1.051546 2.55525678 archaeon 1906665 Archaea Archaea 62.8 8.13e-11   NR RYG60253.1 1906665 g6351 i0 67.4 1.59259259259259 43 14 53.1 0 104 232 27 69 RYG60253.1 MAG: hypothetical protein EON64_19435, partial [archaeon] diamond 387 62.8 1 Archaea               archaeon
11488888 11488888 PRJDB9741_P_NODE_28310_length_167_cov_0.864407_g27993_i0 PRJDB9741 28310 167 0.864407 1.44355969 Methanosarcina lacustris 170861 Archaea Archaea 198 1.7e-46   NTclustered gi|805377189|gb|CP009515.1| 1434111 g27993 i0 88.485 5.84431137724551 165 17 98 2 2 165 1784925 1785088 Methanosarcina lacustris Z-7289, complete genome blastn 976 198 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina lacustris
12461091 12461091 PRJDB9741_P_NODE_7710_length_226_cov_2.237288_g7393_i0 PRJDB9741 7710 226 2.237288 5.05627088 archaeon 1906665 Archaea Archaea 130 3.41e-36   NR RYG50181.1 1906665 g7393 i0 78.9 1.00884955752212 76 15 99.6 1 225 1 136 211 RYG50181.1 MAG: hypothetical protein EON67_05740, partial [archaeon] diamond 228 130 1 Archaea               archaeon
12764566 12764566 PRJDB9741_P_NODE_39051_length_161_cov_1.821429_g38734_i0 PRJDB9741 39051 161 1.821429 2.93250069 uncultured Methanoregulaceae archaeon 1392423 Archaea Archaea 63.9 6.18e-6   NTclustered gi|2874253886|emb|OY970061.1| 1392423 g38734 i0 90 0.490683229813665 50 4 31 1 1 50 2364159 2364111 MAG: uncultured Methanoregulaceae archaeon isolate MFD01231.bin.c.5 genome assembly, chromosome: 1 blastn 79 63.9 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae   uncultured Methanoregulaceae archaeon
16587705 16587705 PRJDB9741_P_NODE_15074_length_186_cov_2.233577_g14757_i0 PRJDB9741 15074 186 2.233577 4.15445322 uncultured archaeon 115547 Archaea Archaea 327 2.36e-85   NTclustered gi|189065855|emb|FM162218.1| 115547 g14757 i0 98.387 99.1505376344086 186 3 100 0 1 186 9 194 Uncultured archaeon partial 16S rRNA gene, isolate ARC7_H02 blastn 18442 327 1 Archaea               uncultured archaeon
18833573 18833573 PRJDB9741_P_NODE_22195_length_174_cov_1.664000_g21878_i0 PRJDB9741 22195 174 1.664 2.89536 Halobacteriales 2235 Archaea Archaea 322 1.01e-83   NTclustered gi|440501381|gb|JX394494.1| 115547 g21878 i0 100 101.011494252874 174 0 100 0 1 174 806 633 Uncultured archaeon clone NYS000286 16S ribosomal RNA gene, partial sequence blastn 17576 322 1 Archaea               uncultured archaeon
24236723 24236723 PRJDB9741_P_NODE_16460_length_184_cov_1.451852_g16143_i0 PRJDB9741 16460 184 1.451852 2.67140768 archaeon 1906665 Archaea Archaea 121 2.97e-33   NR RYH06910.1 1906665 g16143 i0 95.1 2.98369565217391 61 3 99.5 0 2 184 101 161 RYH06910.1 MAG: hypothetical protein EON65_42320 [archaeon] diamond 549 121 1 Archaea               archaeon
26589032 26589032 PRJDB9741_P_NODE_15501_length_186_cov_1.160584_g15184_i0 PRJDB9741 15501 186 1.160584 2.15868624 archaeon 1906665 Archaea Archaea 52.8 4.72e-6   NR MDP2438657.1 1906665 g15184 i0 47.2 0.854838709677419 53 28 85.5 0 161 3 171 223 MDP2438657.1 saccharopine dehydrogenase [archaeon] diamond 159 52.8 1 Archaea               archaeon
26715573 26715573 PRJDB9741_P_NODE_23901_length_172_cov_1.235772_g23584_i0 PRJDB9741 23901 172 1.235772 2.12552784 archaeon 1906665 Archaea Archaea 79.7 1.02e-17   NR RYH00022.1 1906665 g23584 i0 67.3 0.959302325581395 55 18 95.9 0 170 6 29 83 RYH00022.1 MAG: hypothetical protein EON65_49750 [archaeon] diamond 165 79.7 1 Archaea               archaeon
27664571 27664571 PRJDB9741_P_NODE_28384_length_167_cov_0.864407_g28067_i0 PRJDB9741 28384 167 0.864407 1.44355969 archaeon 1906665 Archaea Archaea 66.6 1.25e-11   NR RYY85386.1 1906665 g28067 i0 62.3 0.952095808383233 53 20 95.2 0 4 162 83 135 RYY85386.1 MAG: hypothetical protein EON63_07470 [archaeon] diamond 159 66.6 1 Archaea               archaeon
27885375 27885375 PRJDB9741_P_NODE_9005_length_211_cov_1.709877_g8688_i0 PRJDB9741 9005 211 1.709877 3.60784047 archaeon 1906665 Archaea Archaea 56.2 2.33e-8   NR RYG69078.1 1906665 g8688 i0 78.8 0.469194312796209 33 7 46.9 0 1 99 51 83 RYG69078.1 MAG: hypothetical protein EON64_03620 [archaeon] diamond 99 56.2 1 Archaea               archaeon
28043283 28043283 PRJDB9741_P_NODE_11805_length_196_cov_1.768707_g11488_i0 PRJDB9741 11805 196 1.768707 3.46666572 Methanosarcinales archaeon 2250255 Archaea Archaea 90.5 5.99e-22   NR RYE82776.1 2250255 g11488 i0 79.6 1.66836734693878 54 11 82.7 0 163 2 6 59 RYE82776.1 MAG: 30S ribosomal protein S8e, partial [Methanosarcinales archaeon] diamond 327 90.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales     Methanosarcinales archaeon
28643345 28643345 PRJDB9741_P_NODE_7567_length_228_cov_1.994413_g7250_i0 PRJDB9741 7567 228 1.994413 4.54726164 archaeon 1906665 Archaea Archaea 144 3.2999999999999998e-43   NR RYY77943.1 1906665 g7250 i0 89.3 0.986842105263158 75 8 98.7 0 227 3 1 75 RYY77943.1 MAG: 30S ribosomal protein S17 [archaeon] diamond 225 144 1 Archaea               archaeon
29148775 29148775 PRJDB9741_P_NODE_30869_length_165_cov_2.017241_g30552_i0 PRJDB9741 30869 165 2.017241 3.32844765 Methanobacteriota archaeon 2026739 Archaea Archaea 92.8 6.6500000000000005e-22   NR MCH7661435.1 2026739 g30552 i0 90.7 0.981818181818182 54 5 98.2 0 162 1 124 177 MCH7661435.1 DUF420 domain-containing protein [Methanobacteriota archaeon] diamond 162 92.8 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
29558716 29558716 PRJDB9741_P_NODE_31050_length_165_cov_1.741379_g30733_i0 PRJDB9741 31050 165 1.741379 2.87327535 archaeon 1906665 Archaea Archaea 71.2 7.53e-14   NR RYG62853.1 1906665 g30733 i0 64 0.909090909090909 50 18 90.9 0 165 16 87 136 RYG62853.1 MAG: aldo/keto reductase [archaeon] diamond 150 71.2 1 Archaea               archaeon
29621492 29621492 PRJDB9741_P_NODE_41610_length_157_cov_3.250000_g41293_i0 PRJDB9741 41610 157 3.25 5.1025 Nitrososphaeria archaeon 2268198 Archaea Archaea 50.1 1.1e-5   NR MEM3403561.1 2268198 g41293 i0 49 1.87261146496815 49 25 93.6 0 1 147 89 137 MEM3403561.1 30S ribosomal protein S19e [Nitrososphaeria archaeon] diamond 294 50.1 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria       Nitrososphaeria archaeon
29811278 29811278 PRJDB9741_P_NODE_11051_length_199_cov_3.273333_g10734_i0 PRJDB9741 11051 199 3.273333 6.51393267 archaeon 1906665 Archaea Archaea 75.1 1.3e-15   NR RYG65510.1 1906665 g10734 i0 65.3 0.738693467336683 49 17 73.9 0 198 52 59 107 RYG65510.1 MAG: thiol reductase thioredoxin [archaeon] diamond 147 75.1 1 Archaea               archaeon
30443421 30443421 PRJDB9741_P_NODE_40133_length_161_cov_0.910714_g39816_i0 PRJDB9741 40133 161 0.910714 1.46624954 archaeon 1906665 Archaea Archaea 95.5 3.21e-22   NR RYH28511.1 1906665 g39816 i0 73.6 0.987577639751553 53 14 98.8 0 160 2 168 220 RYH28511.1 MAG: hypothetical protein EON65_11905 [archaeon] diamond 159 95.5 1 Archaea               archaeon
30474988 30474988 PRJDB9741_P_NODE_5613_length_266_cov_1.663594_g5297_i0 PRJDB9741 5613 266 1.663594 4.42516004 Methanoregulaceae archaeon 2485498 Archaea Archaea 49.7 1.74e-4   NR RPI36929.1 2485498 g5297 i0 36.8 0.857142857142857 76 42 85.7 2 26 253 199 268 RPI36929.1 MAG: hypothetical protein EHM53_11655 [Methanoregulaceae archaeon] diamond 228 49.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae   Methanoregulaceae archaeon
30506515 30506515 PRJDB9741_P_NODE_15533_length_186_cov_1.116788_g15216_i0 PRJDB9741 15533 186 1.116788 2.07722568 archaeon 1906665 Archaea Archaea 81.6 8.92e-18   NR RYG68310.1 1906665 g15216 i0 66.7 0.967741935483871 60 20 96.8 0 185 6 19 78 RYG68310.1 MAG: hypothetical protein EON64_05455 [archaeon] diamond 180 81.6 1 Archaea               archaeon
30980603 30980603 PRJDB9741_P_NODE_25974_length_169_cov_1.233333_g25657_i0 PRJDB9741 25974 169 1.233333 2.08433277 archaeon 1906665 Archaea Archaea 53.1 3.16e-7   NR RYG59363.1 1906665 g25657 i0 76.5 0.603550295857988 34 7 58.6 1 3 101 57 90 RYG59363.1 MAG: hypothetical protein EON64_20310, partial [archaeon] diamond 102 53.1 1 Archaea               archaeon
31075280 31075280 PRJDB9741_P_NODE_32375_length_165_cov_0.879310_g32058_i0 PRJDB9741 32375 165 0.87931 1.4508615 Methanosarcinales archaeon 2250255 Archaea Archaea 43.1 0.00932   NR RYE85335.1 2250255 g32058 i0 64.7 0.618181818181818 34 11 60 1 164 66 124 157 RYE85335.1 MAG: hypothetical protein EOO65_00610 [Methanosarcinales archaeon] diamond 102 43.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales     Methanosarcinales archaeon
31359870 31359870 PRJDB9741_P_NODE_19956_length_178_cov_1.403101_g19639_i0 PRJDB9741 19956 178 1.403101 2.49751978 archaeon 1906665 Archaea Archaea 94.4 8.150000000000001e-21   NR MDP2436838.1 1906665 g19639 i0 65.5 0.97752808988764 58 20 97.8 0 5 178 185 242 MDP2436838.1 inorganic diphosphatase [archaeon] diamond 174 94.4 1 Archaea               archaeon
31486442 31486442 PRJDB9741_P_NODE_18936_length_180_cov_1.236641_g18619_i0 PRJDB9741 18936 180 1.236641 2.2259538 archaeon 1906665 Archaea Archaea 80.1 6.42e-16   NR RYY31464.1 1906665 g18619 i0 59.3 0.983333333333333 59 24 98.3 0 178 2 118 176 RYY31464.1 MAG: HAD family hydrolase, partial [archaeon] diamond 177 80.1 1 Archaea               archaeon
31701677 31701677 PRJDB9741_P_NODE_39917_length_161_cov_0.910714_g39600_i0 PRJDB9741 39917 161 0.910714 1.46624954 root 1 Root_unresolved Root_unresolved 71.2 1.03e-12   NR RYG70067.1 1906665 g39600 i0 60 1.86335403726708 50 20 93.2 0 152 3 131 180 RYG70067.1 MAG: PLP-dependent transferase [archaeon] diamond 300 71.2 1 Archaea               archaeon
31802341 31802341 PRJDB9741_P_NODE_36137_length_163_cov_0.894737_g35820_i0 PRJDB9741 36137 163 0.894737 1.45842131 Thermoplasmatota archaeon 2806419 Archaea Archaea 54.3 1.05e-6   NR MFO7676778.1 2806419 g35820 i0 46.2 0.957055214723926 52 28 95.7 0 157 2 151 202 MFO7676778.1 M14 family zinc carboxypeptidase [Thermoplasmatota archaeon] diamond 156 54.3 1 Archaea   Methanobacteriati Thermoplasmatota         Thermoplasmatota archaeon
32055564 32055564 PRJDB9741_P_NODE_37098_length_162_cov_1.743363_g36781_i0 PRJDB9741 37098 162 1.743363 2.82424806 archaeon 1906665 Archaea Archaea 46.6 5.33e-4   NR RYH18302.1 1906665 g36781 i0 48.1 0.962962962962963 52 25 94.4 2 160 8 350 400 RYH18302.1 MAG: hypothetical protein EON65_27325 [archaeon] diamond 156 46.6 1 Archaea               archaeon
32492810 32492810 PRJDB9741_P_NODE_33579_length_164_cov_0.886957_g33262_i0 PRJDB9741 33579 164 0.886957 1.45460948 Halalkalicoccus 332246 Archaea Archaea 89.4 4.81e-19   NR WP_336344683.1 3116651 g33262 i0 74.1 1.97560975609756 54 14 98.8 0 162 1 157 210 WP_336344683.1 hypothetical protein [Halalkalicoccus ordinarius] diamond 324 89.7 0.996655518394649 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halalkalicoccus Halalkalicoccus ordinarius
32750829 32750829 PRJDB9741_P_NODE_27240_length_167_cov_1.483051_g26923_i0 PRJDB9741 27240 167 1.483051 2.47669517 archaeon 1906665 Archaea Archaea 100 2.22e-25   NR RYH05217.1 1906665 g26923 i0 87.3 0.988023952095808 55 7 98.8 0 166 2 73 127 RYH05217.1 MAG: 50S ribosomal protein L15 [archaeon] diamond 165 100 1 Archaea               archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;