RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJDB9741", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJDB9741 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6389068 6389068 PRJDB9741_P_NODE_18426_length_181_cov_1.159091_g18109_i0 PRJDB9741 18426 181 1.159091 2.09795471 Haploplasma axanthum 29552 Bacteria Bacteria 215 1.85e-51   NTclustered gi|1563809587|emb|LR215048.1| 29552 g18109 i0 88.827 894.988950276243 179 14 99 2 3 181 55980 55808 Acholeplasma axanthum strain NCTC10138 genome assembly, chromosome: 1 blastn 161993 215 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Haploplasma Haploplasma axanthum
17862908 17862908 PRJDB9741_P_NODE_7835_length_224_cov_2.914286_g7518_i0 PRJDB9741 7835 224 2.914286 6.52800064 Acholeplasma pleciae 228419 Bacteria Bacteria 99 2.52e-16   NTclustered gi|1720333476|gb|MN271344.1| 228419 g7518 i0 78.182 4.01785714285714 165 28 72 7 63 224 918 1077 Acholeplasma pleciae strain PS-1 (ATCC 49582) 23S ribosomal RNA gene, partial sequence blastn 900 99 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Acholeplasma Acholeplasma pleciae
30285695 30285695 PRJDB9741_P_NODE_15612_length_185_cov_2.580882_g15295_i0 PRJDB9741 15612 185 2.580882 4.7746317 Candidatus Phytoplasma australasiaticum 2754999 Bacteria Bacteria 93.2 6.07e-23   NR MDV3180616.1 2754999 g15295 i0 81.7 0.972972972972973 60 11 97.3 0 6 185 25 84 MDV3180616.1 hypothetical protein [Candidatus Phytoplasma australasiaticum] diamond 180 93.2 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Candidatus Phytoplasma australasiaticum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;