RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJDB9741" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJDB9741 · 3 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2560670 2560670 PRJDB9741_P_NODE_13323_length_190_cov_1.085106_g13006_i0 PRJDB9741 13323 190 1.085106 2.0617014 uncultured delta proteobacterium DeepAnt-1F12 357894 Bacteria Bacteria 237 4.2e-58   NTclustered gi|82617822|gb|DQ267495.1| 357894 g13006 i0 89.474 230.621052631579 190 17 99 3 2 190 3614 3801 Uncultured delta proteobacterium DeepAnt-1F12 fosmid, complete sequence blastn 43818 237 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium DeepAnt-1F12
5113207 5113207 PRJDB9741_P_NODE_1585_length_629_cov_1.901724_g1293_i0 PRJDB9741 1585 629 1.901724 11.96184396 uncultured delta proteobacterium 34034 Bacteria Bacteria 595 2.2999999999999996e-165   NTclustered gi|374854163|dbj|AP011765.1| 34034 g1293 i0 83.912 83.9284578696343 634 91 100 10 1 629 13871 13244 Uncultured delta proteobacterium DNA, fosmid clone: JFF046_H12 blastn 52791 595 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
17862733 17862733 PRJDB9741_P_NODE_2695_length_439_cov_3.510256_g2380_i0 PRJDB9741 2695 439 3.510256 15.41002384 uncultured delta proteobacterium DeepAnt-1F12 357894 Bacteria Bacteria 538 2.6699999999999993e-148   NTclustered gi|82617822|gb|DQ267495.1| 357894 g2380 i0 88.839 185.004555808656 448 37 99 8 4 439 4367 3921 Uncultured delta proteobacterium DeepAnt-1F12 fosmid, complete sequence blastn 81217 538 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium DeepAnt-1F12

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;