RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJDB9741", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 2 ✖

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJDB9741 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16284520 16284520 PRJDB9741_P_NODE_4033_length_328_cov_1.670251_g3717_i0 PRJDB9741 4033 328 1.670251 5.47842328 Vermamoeba 1260114 Tubulinea other_Eukaryota 573 5.329999999999998e-159   NTclustered gi|909719645|gb|KT185625.1| 5778 g3717 i0 98.171 79.8140243902439 328 6 100 0 1 328 5227 4900 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 26179 573 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
16587940 16587940 PRJDB9741_P_NODE_6754_length_241_cov_3.276042_g6437_i0 PRJDB9741 6754 241 3.276042 7.89526122 Lobosea sp. Borok 297386 Tubulinea other_Eukaryota 425 1.11e-114   NTclustered gi|54306228|gb|AY626163.1| 297386 g6437 i0 98.34 89.2655601659751 241 4 100 0 1 241 364 124 Lobosea sp. Borok small subunit ribosomal RNA gene, partial sequence blastn 21513 425 1 Eukaryota Amoebozoa   Tubulinea         Lobosea sp. Borok

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;