RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJDB4941" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJDB4941 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29116934 29116934 PRJDB4941_P_NODE_34229_length_169_cov_0.866667_g33461_i0 PRJDB4941 34229 169 0.866667 1.46466723 Mycoplasmopsis arginini 2094 Bacteria Bacteria 107 8.089999999999999e-28   NR WP_282460061.1 2094 g33461 i0 94.6 0.994082840236686 56 3 99.4 0 168 1 41 96 WP_282460061.1 hypothetical protein, partial [Mycoplasmopsis arginini] diamond 168 107 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini
30980562 30980562 PRJDB4941_P_NODE_21414_length_220_cov_1.099415_g20646_i0 PRJDB4941 21414 220 1.099415 2.418713 Mycoplasmopsis cynos 171284 Bacteria Bacteria 49.7 6.03e-5   NR MCU9936310.1 171284 g20646 i0 59 0.531818181818182 39 16 53.2 0 119 3 137 175 MCU9936310.1 DUF4116 domain-containing protein [Mycoplasmopsis cynos] diamond 117 49.7 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis cynos
32277298 32277298 PRJDB4941_P_NODE_23739_length_207_cov_1.405063_g22971_i0 PRJDB4941 23739 207 1.405063 2.90848041 Mycoplasmopsis arginini 2094 Bacteria Bacteria 139 3.57e-41   NR WP_282460203.1 2094 g22971 i0 100 0.985507246376812 68 0 98.6 0 2 205 15 82 WP_282460203.1 hypothetical protein, partial [Mycoplasmopsis arginini] diamond 204 139 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;