RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJDB4941" and tax_phylum = "Apicomplexa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 5 ✖

tax_clade 1

bioproject 1

  • PRJDB4941 · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10213208 10213208 PRJDB4941_P_NODE_29469_length_184_cov_1.037037_g28701_i0 PRJDB4941 29469 184 1.037037 1.90814808 Plasmodium chabaudi 5825 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.004   NTclustered gi|1027955494|ref|XM_016798297.1| 31271 g28701 i0 92.105 0.206521739130435 38 3 21 0 19 56 4955 4918 Plasmodium chabaudi chabaudi glutamate synthase [NADH], putative (PCHAS_1010400), partial mRNA blastn 38 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium chabaudi
14038405 14038405 PRJDB4941_P_NODE_27092_length_192_cov_2.013986_g26324_i0 PRJDB4941 27092 192 2.013986 3.86685312 Eimeria mitis 44415 SAR_Eukaryotes SAR_Eukaryotes 58.4 3.55e-4   NTclustered gi|916510972|ref|XM_013500255.1| 44415 g26324 i0 94.595 5.59375 37 2 19 0 93 129 261 225 Eimeria mitis uncharacterized protein (EMH_0080490), partial mRNA blastn 1074 58.4 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria mitis
19135611 19135611 PRJDB4941_P_NODE_14396_length_282_cov_1.364807_g13628_i0 PRJDB4941 14396 282 1.364807 3.84875574 Plasmodium gonderi 77519 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.007   NTclustered gi|1620956679|ref|XM_028690398.1| 77519 g13628 i0 100 0.102836879432624 29 0 10 0 236 264 2833 2861 Plasmodium gonderi phospholipid-transporting ATPase (PGO_144080), partial mRNA blastn 29 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium gonderi
24236077 24236077 PRJDB4941_P_NODE_20200_length_227_cov_2.820225_g19432_i0 PRJDB4941 20200 227 2.820225 6.40191075 Plasmodium vivax 5855 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.02   NTclustered gi|156094807|ref|XM_001613390.1| 5855 g19432 i0 100 0.123348017621145 28 0 12 0 194 221 543 516 Plasmodium vivax AAA family ATPase, putative (PVX_087895), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium vivax
31833941 31833941 PRJDB4941_P_NODE_21897_length_217_cov_1.238095_g21129_i0 PRJDB4941 21897 217 1.238095 2.68666615 Cryptosporidium bovis 310047 SAR_Eukaryotes SAR_Eukaryotes 48.1 3.43e-4   NR XP_067183668.1 310047 g21129 i0 29.3 1.036866359447 75 50 99.5 1 216 1 1038 1112 XP_067183668.1 uncharacterized protein FG379_002260 [Cryptosporidium bovis] diamond 225 48.1 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium bovis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;