RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJDB4941" and tax_kingdom = "Thermoproteati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_kingdom 1

  • Thermoproteati · 4 ✖

bioproject 1

  • PRJDB4941 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28637431 28637431 PRJDB4941_P_NODE_16707_length_256_cov_1.584541_g15939_i0 PRJDB4941 16707 256 1.584541 4.05642496 Archaea 2157 Archaea Archaea 41.2 0.0352   NR MEM2549776.1 2026795 g15939 i0 38.8 1.5703125 67 34 70.3 1 210 31 23 89 MEM2549776.1 hypothetical protein [Nitrososphaerota archaeon] diamond 402 41.2 1 Archaea   Thermoproteati Nitrososphaerota         Nitrososphaerota archaeon
28763415 28763415 PRJDB4941_P_NODE_26787_length_193_cov_4.333333_g26019_i0 PRJDB4941 26787 193 4.333333 8.36333269 root 1 Root_unresolved Root_unresolved 109 1.99e-28   NR MCI0560693.1 1971748 g26019 i0 79.7 2.75129533678756 59 12 91.7 0 2 178 107 165 MCI0560693.1 DinB family protein [Nitrososphaera sp.] diamond 531 109 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Nitrososphaera Nitrososphaera sp.
29584143 29584143 PRJDB4941_P_NODE_39590_length_163_cov_0.912281_g38822_i0 PRJDB4941 39590 163 0.912281 1.48701803 Nitrososphaera 497726 Archaea Archaea 89.7 1.78e-21   NR MCY1154161.1 1971748 g38822 i0 100 3.1840490797546 42 0 77.3 0 127 2 1 42 MCY1154161.1 putative oxidoreductase domain protein [Nitrososphaera sp.] diamond 519 89.7 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Nitrososphaera Nitrososphaera sp.
30317395 30317395 PRJDB4941_P_NODE_23772_length_207_cov_1.278481_g23004_i0 PRJDB4941 23772 207 1.278481 2.64645567 Candidatus Bathyarchaeota archaeon 2026714 Archaea Archaea 66.2 6.42e-12   NR TMI21981.1 2026714 g23004 i0 96.8 2.69565217391304 31 1 44.9 0 1 93 92 122 TMI21981.1 MAG: tRNA-binding protein [Candidatus Bathyarchaeota archaeon] diamond 558 66.2 1 Archaea   Thermoproteati Candidatus Bathyarchaeota         Candidatus Bathyarchaeota archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;