RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJDB4941" and tax_kingdom = "Methanobacteriati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 6 ✖

bioproject 1

  • PRJDB4941 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6388760 6388760 PRJDB4941_P_NODE_39246_length_164_cov_0.860870_g38478_i0 PRJDB4941 39246 164 0.86087 1.4118268 Methanobrevibacter millerae 230361 Archaea Archaea 106 1.04e-18   NTclustered gi|968564921|gb|CP011266.1| 230361 g38478 i0 79.085 13.9268292682927 153 32 93 0 5 157 652698 652850 Methanobrevibacter millerae strain SM9, complete genome blastn 2284 106 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter millerae
12763984 12763984 PRJDB4941_P_NODE_32571_length_173_cov_1.612903_g31803_i0 PRJDB4941 32571 173 1.612903 2.79032219 Halalkaliarchaeum sp. AArc-CO 2866381 Archaea Archaea 113 6.5700000000000005e-21   NTclustered gi|2295229904|gb|CP087723.1| 2866381 g31803 i0 81.379 18.1098265895954 145 21 82 3 1 142 1721305 1721446 Halalkaliarchaeum sp. AArc-CO chromosome, complete genome blastn 3133 113 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halalkaliarchaeum Halalkaliarchaeum sp. AArc-CO
28043256 28043256 PRJDB4941_P_NODE_17365_length_250_cov_0.985075_g16597_i0 PRJDB4941 17365 250 0.985075 2.4626875 Methanobacteriota archaeon 2026739 Archaea Archaea 49.3 1.95e-4   NR MBP05020.1 2026739 g16597 i0 41.5 0.636 53 31 63.6 0 213 55 239 291 MBP05020.1 hypothetical protein [Methanobacteriota archaeon] diamond 159 49.3 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
29937834 29937834 PRJDB4941_P_NODE_28951_length_185_cov_2.455882_g28183_i0 PRJDB4941 28951 185 2.455882 4.5433817 Natronococcus pandeyae 2055836 Archaea Archaea 80.5 6.92e-18   NR WP_148860277.1 2055836 g28183 i0 58.3 1.92972972972973 60 25 97.3 0 1 180 31 90 WP_148860277.1 PqqD family protein [Natronococcus pandeyae] diamond 357 80.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronococcus Natronococcus pandeyae
29937842 29937842 PRJDB4941_P_NODE_37751_length_165_cov_0.896552_g36983_i0 PRJDB4941 37751 165 0.896552 1.4793108 Methanoculleus sp. 90427 Archaea Archaea 42.4 0.00897   NR WP_292561050.1 90427 g36983 i0 40 0.818181818181818 45 27 81.8 0 2 136 48 92 WP_292561050.1 hypothetical protein [Methanoculleus sp.] diamond 135 42.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanoculleus Methanoculleus sp.
30942983 30942983 PRJDB4941_P_NODE_2694_length_988_cov_5.815761_g2054_i0 PRJDB4941 2694 988 5.815761 57.45971868 Stenosarchaea group 2290931 Archaea Archaea 186 2.94e-49   NR WP_367358456.1 90426 g2054 i0 47.2 3.23076923076923 178 93 53.7 1 980 450 600 777 WP_367358456.1 transglutaminase domain-containing protein [Methanothrix sp.] diamond 3192 187 0.994652406417112 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;