RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJDB4941", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Levyibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Levyibacteriota · 2 ✖

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJDB4941 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28043275 28043275 PRJDB4941_P_NODE_40085_length_163_cov_0.912281_g39317_i0 PRJDB4941 40085 163 0.912281 1.48701803 Candidatus Levybacteria bacterium RIFCSPHIGHO2_ 2052151 Bacteria Bacteria 105 9.66e-25   NR OGH16182.1 1798596 g39317 i0 84.9 0.975460122699387 53 8 97.5 0 3 161 15 67 OGH16182.1 MAG: hypothetical protein A2869_05300 [Candidatus Levybacteria bacterium RIFCSPHIGHO2_01_FULL_40_58] diamond 159 105 1 Bacteria Bacteria candidate phyla   Candidatus Levyibacteriota         Candidatus Levybacteria bacterium RIFCSPHIGHO2_01_FULL_40_58
28384579 28384579 PRJDB4941_P_NODE_38806_length_164_cov_0.904348_g38038_i0 PRJDB4941 38806 164 0.904348 1.48313072 Bacteria 2 Bacteria Bacteria 77 1.94e-15   NR OGH18297.1 1798590 g38038 i0 69.2 1.90243902439024 52 16 95.1 0 164 9 143 194 OGH18297.1 MAG: hypothetical protein A2770_01980 [Candidatus Levybacteria bacterium RIFCSPHIGHO2_01_FULL_38_12] diamond 312 77 1 Bacteria Bacteria candidate phyla   Candidatus Levyibacteriota         Candidatus Levybacteria bacterium RIFCSPHIGHO2_01_FULL_38_12

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;