RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJDB4470" and tax_phylum = "Spirochaetota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJDB4470 · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9145 9145 PRJDB4470_P_NODE_114781_length_164_cov_0.904348_g113626_i0 PRJDB4470 114781 164 0.904348 1.48313072 Treponema rectale 744512 Bacteria Bacteria 71.3 3.78e-8   NTclustered gi|1919550644|gb|CP031517.1| 744512 g113626 i0 78.632 35.1280487804878 117 17 67 5 1 110 1038626 1038741 Treponema rectale strain CHPA chromosome, complete genome blastn 5761 71.3 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema rectale
3531848 3531848 PRJDB4470_P_NODE_108003_length_166_cov_0.871795_g106848_i0 PRJDB4470 108003 166 0.871795 1.4471797 Treponema 157 Bacteria Bacteria 285 1.26e-72   NTclustered gi|719625061|gb|CP009227.1| 1539298 g106848 i0 97.59 5 166 4 100 0 1 166 1577424 1577259 Treponema sp. OMZ 838, complete genome blastn 830 285 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp. OMZ 838
13734712 13734712 PRJDB4470_P_NODE_114251_length_164_cov_1.330435_g113096_i0 PRJDB4470 114251 164 1.330435 2.1819134 Treponema 157 Bacteria Bacteria 185 1.2899999999999997e-42   NTclustered gi|2034589463|gb|CP050497.1| 69710 g113096 i0 89.655 7.21951219512195 145 15 88 0 20 164 276014 275870 Treponema vincentii strain OMZ 806 chromosome, complete genome blastn 1184 185 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema vincentii
14037182 14037182 PRJDB4470_P_NODE_116452_length_164_cov_0.886957_g115297_i0 PRJDB4470 116452 164 0.886957 1.45460948 Treponema vincentii 69710 Bacteria Bacteria 191 2.78e-44   NTclustered gi|2265115921|gb|CP051153.1| 69710 g115297 i0 89.865 7.75609756097561 148 15 90 0 15 162 2002253 2002106 Treponema vincentii strain OMZ 862 chromosome, complete genome blastn 1272 191 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema vincentii
20107752 20107752 PRJDB4470_P_NODE_107896_length_166_cov_0.871795_g106741_i0 PRJDB4470 107896 166 0.871795 1.4471797 Bacteria 2 Bacteria Bacteria 307 2.69e-79   NTclustered gi|2265168914|gb|CP051304.1| 158 g106741 i0 100 4 166 0 100 0 1 166 2613531 2613696 Treponema denticola strain CD-1 chromosome, complete genome blastn 664 307 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema denticola
31802275 31802275 PRJDB4470_P_NODE_39817_length_345_cov_1.756757_g38665_i0 PRJDB4470 39817 345 1.756757 6.06081165 Spirochaetales bacterium 2026792 Bacteria Bacteria 44.3 0.0278   NR MBQ2294799.1 2026792 g38665 i0 32.9 2.21739130434783 85 45 73.9 3 313 59 66 138 MBQ2294799.1 DUF115 domain-containing protein [Spirochaetales bacterium] diamond 765 44.3 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales     Spirochaetales bacterium
31897388 31897388 PRJDB4470_P_NODE_55817_length_265_cov_1.842593_g54662_i0 PRJDB4470 55817 265 1.842593 4.88287145 Spirochaetota bacterium 2202144 Bacteria Bacteria 65.1 6.13e-10   NR MBN2435506.1 2202144 g54662 i0 56.4 0.622641509433962 55 24 62.3 0 198 34 3 57 MBN2435506.1 hypothetical protein [Spirochaetota bacterium] diamond 165 65.1 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;