RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJDB4470", tax_phylum = "Mycoplasmatota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJDB4470 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28769320 28769320 PRJDB4470_P_NODE_108727_length_166_cov_0.871795_g107572_i0 PRJDB4470 108727 166 0.871795 1.4471797 Acholeplasma sp. 33015 Bacteria Bacteria 69.7 4.09e-12   NR HEY8405251.1 33015 g107572 i0 69.1 0.993975903614458 55 16 97.6 1 166 5 252 306 HEY8405251.1 hypothetical protein [Acholeplasma sp.] diamond 165 69.7 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Acholeplasma Acholeplasma sp.
28832463 28832463 PRJDB4470_P_NODE_100268_length_169_cov_1.675000_g99113_i0 PRJDB4470 100268 169 1.675 2.83075 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 90.5 2.07e-19   NR HHU80222.1 1898209 g99113 i0 72.7 0.976331360946746 55 15 97.6 0 165 1 716 770 HHU80222.1 DNA polymerase III subunit alpha [Acholeplasmataceae bacterium] diamond 165 90.5 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;