RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where bioproject = "PRJDB4470" and tax_phylum = "Mollusca"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 11 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJDB4470 · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1283629 1283629 PRJDB4470_P_NODE_28942_length_430_cov_2.078740_g27802_i0 PRJDB4470 28942 430 2.07874 8.938582 Biomphalaria glabrata 6526 Mollusca Mollusca 52.8 0.041   NTclustered gi|2502153485|ref|XM_056022348.1| 6526 g27802 i0 100 0.195348837209302 28 0 7 0 402 429 5189 5216 PREDICTED: Biomphalaria glabrata apoptosis-resistant E3 ubiquitin protein ligase 1-like (LOC106061940), transcript variant X2, mRNA blastn 84 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Planorbidae Biomphalaria Biomphalaria glabrata
3836039 3836039 PRJDB4470_P_NODE_86204_length_188_cov_2.201439_g85049_i0 PRJDB4470 86204 188 2.201439 4.13870532 Aplysia californica 6500 Mollusca Mollusca 335 1.4299999999999995e-87   NTclustered gi|325297131|ref|NM_001204646.1| 6500 g85049 i0 99.457 81.5691489361702 184 1 98 0 5 188 405 222 Aplysia californica polyubiquitin-C (LOC101860494), mRNA blastn 15335 335 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Aplysiida Aplysiidae Aplysia Aplysia californica
27348769 27348769 PRJDB4470_P_NODE_7643_length_878_cov_4.926417_g6890_i0 PRJDB4470 7643 878 4.926417 43.25394126 Mytilus galloprovincialis 29158 Mollusca Mollusca 60.8 2.16e-6   NR VDI23929.1 29158 g6890 i0 42.9 1.71184510250569 84 46 28.7 1 576 827 126 207 VDI23929.1 serum/glucocorticoid-regulated kinase 3, partial [Mytilus galloprovincialis] diamond 1503 60.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus galloprovincialis
27948511 27948511 PRJDB4470_P_NODE_59125_length_253_cov_1.406863_g57970_i0 PRJDB4470 59125 253 1.406863 3.55936339 Lymnaea stagnalis 6523 Mollusca Mollusca 131 4.6799999999999996e-34   NR CAL1546667.1 6523 g57970 i0 77.2 2.85770750988142 79 18 93.7 0 5 241 363 441 CAL1546667.1 unnamed protein product [Lymnaea stagnalis] diamond 723 131 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Lymnaeidae Lymnaea Lymnaea stagnalis
28138185 28138185 PRJDB4470_P_NODE_89245_length_184_cov_1.155556_g88090_i0 PRJDB4470 89245 184 1.155556 2.12622304 Patella caerulea 87958 Mollusca Mollusca 43.1 0.0125   NR KAK6173096.1 87958 g88090 i0 44.7 1.53260869565217 47 26 76.6 0 16 156 236 282 KAK6173096.1 hypothetical protein SNE40_016621 [Patella caerulea] diamond 282 43.1 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Patellidae Patella Patella caerulea
28327243 28327243 PRJDB4470_P_NODE_82566_length_194_cov_1.793103_g81411_i0 PRJDB4470 82566 194 1.793103 3.47861982 Dreissena polymorpha 45954 Mollusca Mollusca 44.3 0.00547   NR XP_052275100.1 45954 g81411 i0 40.4 0.72680412371134 47 28 72.7 0 184 44 7 53 XP_052275100.1 uncharacterized protein LOC127874668 isoform X1 [Dreissena polymorpha] diamond 141 44.3 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Dreissenidae Dreissena Dreissena polymorpha
30885555 30885555 PRJDB4470_P_NODE_39334_length_348_cov_1.521739_g38182_i0 PRJDB4470 39334 348 1.521739 5.29565172 Acanthosepion pharaonis 158019 Mollusca Mollusca 50.8 1.57e-4   NR CAE1247947.1 158019 g38182 i0 58.5 1.76724137931034 41 14 32.8 1 299 186 8 48 CAE1247947.1 unnamed protein product [Acanthosepion pharaonis] diamond 615 50.8 1 Eukaryota Opisthokonta Metazoa Mollusca Cephalopoda Sepiida Sepiidae Acanthosepion Acanthosepion pharaonis
31005989 31005989 PRJDB4470_P_NODE_66874_length_229_cov_0.866667_g65719_i0 PRJDB4470 66874 229 0.866667 1.98466743 Metazoa 33208 Mollusca Mollusca 50.4 6.06e-5   NR WAR10077.1 6604 g65719 i0 87.5 1.38864628820961 32 4 41.9 0 1 96 823 854 WAR10077.1 IMB1-like protein [Mya arenaria] diamond 318 50.8 0.992125984251969 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Myidae Mya Mya arenaria
31486393 31486393 PRJDB4470_P_NODE_47656_length_301_cov_1.349206_g46503_i0 PRJDB4470 47656 301 1.349206 4.06111006 Liolophura japonica 13599 Mollusca Mollusca 60.1 4.87e-8   NR XP_064601568.1 13599 g46503 i0 65.7 0.667774086378738 35 12 34.9 0 196 300 117 151 XP_064601568.1 opioid growth factor receptor-like protein 1 [Liolophura japonica] diamond 201 60.1 1 Eukaryota Opisthokonta Metazoa Mollusca Polyplacophora Chitonida Chitonidae Liolophura Liolophura japonica
31865529 31865529 PRJDB4470_P_NODE_61337_length_245_cov_2.867347_g60182_i0 PRJDB4470 61337 245 2.867347 7.02500015 Pinctada imbricata 66713 Mollusca Mollusca 42.7 0.037   NR KAK3093451.1 66713 g60182 i0 51.3 0.955102040816327 39 19 47.8 0 16 132 241 279 KAK3093451.1 hypothetical protein FSP39_015862 [Pinctada imbricata] diamond 234 42.7 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pterioida Pteriidae Pinctada Pinctada imbricata
32340570 32340570 PRJDB4470_P_NODE_68219_length_225_cov_1.528409_g67064_i0 PRJDB4470 68219 225 1.528409 3.43892025 Lymnaea stagnalis 6523 Mollusca Mollusca 48.5 2.59e-4   NR CAL1536677.1 6523 g67064 i0 67.6 0.453333333333333 34 11 45.3 0 119 220 4 37 CAL1536677.1 unnamed protein product [Lymnaea stagnalis] diamond 102 48.5 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Lymnaeidae Lymnaea Lymnaea stagnalis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;