RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJDB4470" and tax_phylum = "Evosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Evosea · 8 ✖

tax_clade 1

bioproject 1

  • PRJDB4470 · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9437 9437 PRJDB4470_P_NODE_33541_length_389_cov_3.502941_g32392_i0 PRJDB4470 33541 389 3.502941 13.62644049 Coremiostelium polycephalum 142831 Evosea other_Eukaryota 93.5 2.19e-14   NTclustered gi|85062629|gb|DQ340387.1| 142831 g32392 i0 88.312 20.853470437018 77 9 20 0 31 107 12524 12448 Dictyostelium polycephalum 17S ribosomal RNA, 5.8S ribosomal RNA, and 26S ribosomal RNA genes, complete sequence blastn 8112 93.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales   Coremiostelium Coremiostelium polycephalum
1284196 1284196 PRJDB4470_P_NODE_91742_length_180_cov_1.938931_g90587_i0 PRJDB4470 91742 180 1.938931 3.4900758 Acytostelium subglobosum 361139 Evosea other_Eukaryota 52.8 0.015   NTclustered gi|831786596|ref|XM_012902707.1| 1410327 g90587 i0 100 0.155555555555556 28 0 16 0 29 56 2881 2908 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
22960960 22960960 PRJDB4470_P_NODE_102339_length_168_cov_0.873950_g101184_i0 PRJDB4470 102339 168 0.87395 1.468236 Dictyostelium discoideum 44689 Evosea other_Eukaryota 52.8 0.014   NTclustered gi|66825574|ref|XM_641050.1| 352472 g101184 i0 100 0.166666666666667 28 0 17 0 61 88 384 411 Dictyostelium discoideum AX4 hypothetical protein (DDB_G0269646) mRNA, complete cds blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
28580082 28580082 PRJDB4470_P_NODE_57587_length_258_cov_3.014354_g56432_i0 PRJDB4470 57587 258 3.014354 7.77703332 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 42 0.0377   NR KAH3764260.1 1580589 g56432 i0 34.9 0.732558139534884 63 41 73.3 0 69 257 43 105 KAH3764260.1 hypothetical protein Pelo_3878 [Pelomyxa schiedti] diamond 189 42 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
29022403 29022403 PRJDB4470_P_NODE_97748_length_172_cov_1.658537_g96593_i0 PRJDB4470 97748 172 1.658537 2.85268364 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 113 2.29e-27   NR PRP84059.1 1890364 g96593 i0 89.5 0.994186046511628 57 6 99.4 0 1 171 771 827 PRP84059.1 hypothetical protein PROFUN_08521 [Planoprotostelium fungivorum] diamond 171 113 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
29678817 29678817 PRJDB4470_P_NODE_56090_length_264_cov_1.767442_g54935_i0 PRJDB4470 56090 264 1.767442 4.66604688 Eumycetozoa 142796 Evosea other_Eukaryota 147 8.959999999999997e-43   NR P34729.1 5791 g54935 i0 80.2 2.93181818181818 86 17 97.7 0 3 260 81 166 P34729.1 RecName: Full=Ras-like protein 1; Flags: Precursor [Physarum polycephalum] diamond 774 147 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
31327958 31327958 PRJDB4470_P_NODE_119016_length_163_cov_0.912281_g117861_i0 PRJDB4470 119016 163 0.912281 1.48701803 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 51.2 1.3e-5   NR PRP85379.1 1890364 g117861 i0 58.3 0.662576687116564 36 15 66.3 0 2 109 679 714 PRP85379.1 acyl-coenzyme A thioesterase 9, mitochondrial-like [Planoprotostelium fungivorum] diamond 108 51.2 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
32624695 32624695 PRJDB4470_P_NODE_29560_length_424_cov_1.741333_g28419_i0 PRJDB4470 29560 424 1.741333 7.38325192 Dictyostelium discoideum AX4 352472 Evosea other_Eukaryota 50.1 7.43e-4   NR XP_636931.1 352472 g28419 i0 52.2 0.325471698113208 46 22 32.5 0 141 4 776 821 XP_636931.1 hypothetical protein DDB_G0288001 [Dictyostelium discoideum AX4] diamond 138 50.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;