RNAquarium Metadata Server
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contig_metadata

13 rows where bioproject = "PRJDB4470", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 13 ✖

tax_kingdom 1

  • Pseudomonadati · 13 ✖

bioproject 1

  • PRJDB4470 · 13 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
981188 981188 PRJDB4470_P_NODE_104281_length_167_cov_0.881356_g103126_i0 PRJDB4470 104281 167 0.881356 1.47186452 Campylobacter 194 Bacteria Bacteria 259 7.69e-65   NTclustered gi|1483583497|emb|LT631421.1| 204 g103126 i0 94.643 2.01197604790419 168 7 100 2 1 167 40892 40726 Campylobacter showae genome assembly, chromosome: I blastn 336 259 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter showae
8936373 8936373 PRJDB4470_P_NODE_30908_length_411_cov_3.323204_g29763_i0 PRJDB4470 30908 411 3.323204 13.65836844 Malaciobacter marinus 505249 Bacteria Bacteria 54.7 0.011   NTclustered gi|1474785413|gb|CP032101.1| 505249 g29763 i0 100 0.0705596107055961 29 0 7 0 322 350 2761273 2761301 Malaciobacter marinus strain JCM 15502 chromosome, complete genome blastn 29 54.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Malaciobacter Malaciobacter marinus
15311590 15311590 PRJDB4470_P_NODE_35713_length_373_cov_1.484568_g34561_i0 PRJDB4470 35713 373 1.484568 5.53743864 uncultured Aliarcobacter sp. 2321118 Bacteria Bacteria 466 1.07e-126   NTclustered gi|2621785459|emb|OY781917.1| 2321118 g34561 i0 89.239 65.1367292225201 381 30 99 3 3 373 149418 149797 MAG: uncultured Aliarcobacter sp. isolate 35e71162-57ce-4606-8f28-3f72018c63bd genome assembly, chromosome: 2 blastn 24296 466 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter uncultured Aliarcobacter sp.
22961724 22961724 PRJDB4470_P_NODE_73119_length_213_cov_1.902439_g71964_i0 PRJDB4470 73119 213 1.902439 4.05219507 Helicobacter pylori 210 Bacteria Bacteria 54.7 0.005   NTclustered gi|2641914139|gb|CP078365.1| 210 g71964 i0 100 0.136150234741784 29 0 14 0 49 77 1021678 1021706 Helicobacter pylori strain HpGP-SGP-024 chromosome, complete genome blastn 29 54.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
22961928 22961928 PRJDB4470_P_NODE_98399_length_171_cov_2.131148_g97244_i0 PRJDB4470 98399 171 2.131148 3.64426308 Arcobacter ellisii 913109 Bacteria Bacteria 278 2.17e-70   NTclustered gi|1474793334|gb|CP032097.1| 913109 g97244 i0 95.906 63.7953216374269 171 7 100 0 1 171 421694 421524 Arcobacter ellisii strain LMG 26155 chromosome, complete genome blastn 10909 278 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter ellisii
27190384 27190384 PRJDB4470_P_NODE_84282_length_191_cov_1.950704_g83127_i0 PRJDB4470 84282 191 1.950704 3.72584464 Helicobacter pylori 210 Bacteria Bacteria 64.3 1.66e-11   NR GAA6795649.1 210 g83127 i0 87.8 0.769633507853403 49 6 77 0 190 44 22 70 GAA6795649.1 hypothetical protein Kyoto200A_0500 [Helicobacter pylori] diamond 147 64.3 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
27569557 27569557 PRJDB4470_P_NODE_50344_length_288_cov_1.874477_g49191_i0 PRJDB4470 50344 288 1.874477 5.39849376 Campylobacterota bacterium 2026809 Bacteria Bacteria 43.1 0.0377   NR MCI0500547.1 2026809 g49191 i0 36.7 0.625 60 36 62.5 1 259 80 136 193 MCI0500547.1 DegT/DnrJ/EryC1/StrS family aminotransferase [Campylobacterota bacterium] diamond 180 43.1 1 Bacteria   Pseudomonadati Campylobacterota         Campylobacterota bacterium
29457836 29457836 PRJDB4470_P_NODE_92910_length_179_cov_0.984615_g91755_i0 PRJDB4470 92910 179 0.984615 1.76246085 Bacteria 2 Bacteria Bacteria 42 0.00884   NR GAA6800385.1 210 g91755 i0 85 0.636871508379888 20 3 33.5 0 172 113 1 20 GAA6800385.1 hypothetical protein Kyoto200A_2080 [Helicobacter pylori] diamond 114 42 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
30822351 30822351 PRJDB4470_P_NODE_28314_length_436_cov_1.813953_g27175_i0 PRJDB4470 28314 436 1.813953 7.90883508 Poseidonibacter antarcticus 2478538 Bacteria Bacteria 119 1.62e-30   NR WP_162984614.1 2478538 g27175 i0 43.5 0.94954128440367 138 78 95 0 418 5 53 190 WP_162984614.1 GAG-pre-integrase domain-containing protein, partial [Poseidonibacter antarcticus] diamond 414 119 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Poseidonibacter Poseidonibacter antarcticus
31258838 31258838 PRJDB4470_P_NODE_36955_length_364_cov_1.428571_g35803_i0 PRJDB4470 36955 364 1.428571 5.19999844 Pseudomonadati 3379134 Bacteria Bacteria 154 4.51e-43   NR WP_129060907.1 2023153 g35803 i0 81.5 5.34065934065934 92 17 75.8 0 281 6 1 92 WP_129060907.1 DUF6414 family protein [Halarcobacter mediterraneus] diamond 1944 154 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Halarcobacter Halarcobacter mediterraneus
31327973 31327973 PRJDB4470_P_NODE_81116_length_197_cov_1.317568_g79961_i0 PRJDB4470 81116 197 1.317568 2.59560896 Aliarcobacter sp. 2321116 Bacteria Bacteria 107 4.57e-25   NR MFA7087664.1 2321116 g79961 i0 75.4 1.82741116751269 65 13 99 1 1 195 458 519 MFA7087664.1 AAA family ATPase [Aliarcobacter sp.] diamond 360 107 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter sp.
31897387 31897387 PRJDB4470_P_NODE_54297_length_271_cov_2.027027_g53142_i0 PRJDB4470 54297 271 2.027027 5.49324317 Helicobacter pylori 210 Bacteria Bacteria 42.7 0.0102   NR GAA9209820.1 210 g53142 i0 61.8 0.74169741697417 34 13 37.6 0 164 265 11 44 GAA9209820.1 hypothetical protein Kyoto198A_1890 [Helicobacter pylori] diamond 201 42.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
32277283 32277283 PRJDB4470_P_NODE_93659_length_178_cov_0.922481_g92504_i0 PRJDB4470 93659 178 0.922481 1.64201618 Helicobacter pylori 210 Bacteria Bacteria 57.8 1.4e-8   NR GAA8908272.1 210 g92504 i0 78.8 0.556179775280899 33 7 55.6 0 177 79 51 83 GAA8908272.1 hypothetical protein Kyoto166A_1320 [Helicobacter pylori] diamond 99 57.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;