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contig_metadata

12 rows where bioproject = "PRJDB4470", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 12 ✖

tax_kingdom 1

  • Pseudomonadati · 12 ✖

bioproject 1

  • PRJDB4470 · 12 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12762642 12762642 PRJDB4470_P_NODE_112031_length_165_cov_0.879310_g110876_i0 PRJDB4470 112031 165 0.87931 1.4508615 Bdellovibrio 958 Bacteria Bacteria 100 8.22e-23   NR WP_063244129.1 959 g110876 i0 89.1 2.96363636363636 55 6 100 0 1 165 431 485 WP_063244129.1 sensor histidine kinase [Bdellovibrio bacteriovorus] diamond 489 100 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
12763046 12763046 PRJDB4470_P_NODE_4231_length_1127_cov_4.569573_g3707_i0 PRJDB4470 4231 1127 4.569573 51.49908771 Bdellovibrio sp. CG1 28201 Bacteria Bacteria 476 8.049999999999999e-164   NR PIS10887.1 1975526 g3707 i0 62.1 0.976929902395741 367 135 97.7 1 25 1125 53 415 PIS10887.1 MAG: MFS transporter [Bdellovibrio sp. CG10_big_fil_rev_8_21_14_0_10_47_8] diamond 1101 476 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. CG10_big_fil_rev_8_21_14_0_10_47_8
14037096 14037096 PRJDB4470_P_NODE_105652_length_167_cov_0.864407_g104497_i0 PRJDB4470 105652 167 0.864407 1.44355969 Bdellovibrio sp. HCB-162 3394234 Bacteria Bacteria 193 7.909999999999999e-45   NTclustered gi|2898207634|gb|CP178861.1| 3394234 g104497 i0 87.425 1 167 21 100 0 1 167 800386 800552 Bdellovibrio sp. HCB-162 chromosome, complete genome blastn 167 193 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB-162
17860901 17860901 PRJDB4470_P_NODE_108575_length_166_cov_0.871795_g107420_i0 PRJDB4470 108575 166 0.871795 1.4471797 Bdellovibrio bacteriovorus 959 Bacteria Bacteria 121 3.76e-23   NTclustered gi|2800914199|gb|CP168971.1| 959 g107420 i0 80.921 1.16867469879518 152 29 92 0 3 154 2455235 2455386 Bdellovibrio bacteriovorus strain Bd16 chromosome, complete genome blastn 194 121 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
21686196 21686196 PRJDB4470_P_NODE_54798_length_269_cov_1.850000_g53643_i0 PRJDB4470 54798 269 1.85 4.9765 Bacteriovorax stolpii 960 Bacteria Bacteria 396 9.88e-106   NTclustered gi|1700689994|gb|CP030035.1| 960 g53643 i0 93.284 240.28624535316 268 18 99 0 1 268 1661418 1661151 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 64637 396 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
27506644 27506644 PRJDB4470_P_NODE_112823_length_165_cov_0.879310_g111668_i0 PRJDB4470 112823 165 0.87931 1.4508615 Bacteriovorax sp. 2608087 Bacteria Bacteria 83.6 2.88e-17   NR MDO9183135.1 2608087 g111668 i0 72.2 0.981818181818182 54 15 98.2 0 2 163 183 236 MDO9183135.1 recombinase family protein [Bacteriovorax sp.] diamond 162 83.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp.
27980085 27980085 PRJDB4470_P_NODE_112205_length_165_cov_0.879310_g111050_i0 PRJDB4470 112205 165 0.87931 1.4508615 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 55.1 5.27e-7   NR MBL7688214.1 2026715 g111050 i0 41.5 1.90909090909091 53 31 96.4 0 161 3 112 164 MBL7688214.1 trypsin-like serine protease [Pseudobdellovibrionaceae bacterium] diamond 315 55.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
29337818 29337818 PRJDB4470_P_NODE_95449_length_175_cov_1.619048_g94294_i0 PRJDB4470 95449 175 1.619048 2.833334 Oligoflexia bacterium 2599941 Bacteria Bacteria 60.5 8.01e-9   NR MCO5142403.1 2599941 g94294 i0 66.7 0.72 42 14 72 0 3 128 493 534 MCO5142403.1 membrane protein insertase YidC [Oligoflexia bacterium] diamond 126 60.5 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia       Oligoflexia bacterium
30411942 30411942 PRJDB4470_P_NODE_100173_length_169_cov_1.700000_g99018_i0 PRJDB4470 100173 169 1.7 2.873 Bdellovibrio bacteriovorus 959 Bacteria Bacteria 54.7 8.43e-7   NR WP_374077481.1 959 g99018 i0 48.2 0.994082840236686 56 29 99.4 0 1 168 637 692 WP_374077481.1 hypothetical protein [Bdellovibrio bacteriovorus] diamond 168 54.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
30948911 30948911 PRJDB4470_P_NODE_111654_length_165_cov_0.879310_g110499_i0 PRJDB4470 111654 165 0.87931 1.4508615 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 61.2 3.79e-9   NR HMN67922.1 2053517 g110499 i0 53.7 0.981818181818182 54 25 98.2 0 164 3 714 767 HMN67922.1 response regulator [Bdellovibrionales bacterium] diamond 162 61.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
31517901 31517901 PRJDB4470_P_NODE_111736_length_165_cov_0.879310_g110581_i0 PRJDB4470 111736 165 0.87931 1.4508615 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 105 7.27e-25   NR MCC6137366.1 2026715 g110581 i0 84.9 1.92727272727273 53 8 96.4 0 2 160 146 198 MCC6137366.1 alkaline phosphatase D family protein [Pseudobdellovibrionaceae bacterium] diamond 318 105 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
32782067 32782067 PRJDB4470_P_NODE_105360_length_167_cov_0.864407_g104205_i0 PRJDB4470 105360 167 0.864407 1.44355969 Bdellovibrio sp. HCB2-146 3394362 Bacteria Bacteria 104 2.6799999999999998e-24   NR WP_413938630.1 3394362 g104205 i0 90.9 0.988023952095808 55 5 98.8 0 3 167 289 343 WP_413938630.1 excinuclease ABC subunit UvrA [Bdellovibrio sp. HCB2-146] diamond 165 104 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB2-146

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;