RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJDB4470", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 6 ✖

tax_kingdom 1

  • Metazoa · 6 ✖

tax_clade 1

bioproject 1

  • PRJDB4470 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9636 9636 PRJDB4470_P_NODE_54401_length_271_cov_1.166667_g53246_i0 PRJDB4470 54401 271 1.166667 3.16166757 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.025   NTclustered gi|690019913|emb|LM527428.1| 174720 g53246 i0 84.483 0.214022140221402 58 4 20 5 166 218 104 47 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0001763 blastn 58 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
2559244 2559244 PRJDB4470_P_NODE_30183_length_417_cov_6.595109_g29041_i0 PRJDB4470 30183 417 6.595109 27.50160453 Plectus acuminatus 70689 Nematoda Nematoda 127 2.0899999999999996e-31   NR AOW68740.1 70689 g29041 i0 89.9 0.496402877697842 69 7 49.6 0 400 194 383 451 AOW68740.1 cytochrome c oxidase subunit I [Plectus acuminatus] diamond 207 127 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Plectida Plectidae Plectus Plectus acuminatus
8634420 8634420 PRJDB4470_P_NODE_45387_length_313_cov_1.545455_g44234_i0 PRJDB4470 45387 313 1.545455 4.83727415 Opisthokonta 33154 Nematoda Nematoda 130 1.31e-25   NTclustered gi|11094934|gb|AC084484.1|CBRG03N05 6238 g44234 i0 92.308 28.9776357827476 91 7 29 0 223 313 5742 5652 Caenorhabditis briggsae cosmid G03N05, complete sequence blastn 9070 130 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
21686285 21686285 PRJDB4470_P_NODE_65098_length_234_cov_1.124324_g63943_i0 PRJDB4470 65098 234 1.124324 2.63091816 Strongyloides papillosus 174720 Nematoda Nematoda 172 1.54e-38   NTclustered gi|690018930|emb|LM526223.1| 174720 g63943 i0 85.976 76.8119658119658 164 19 69 4 24 185 9743 9904 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000575 blastn 17974 172 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
27311276 27311276 PRJDB4470_P_NODE_43423_length_323_cov_3.875912_g42270_i0 PRJDB4470 43423 323 3.875912 12.51919576 Rhabditida 6236 Nematoda Nematoda 89.7 8.55e-20   NR CDJ89106.1 6289 g42270 i0 45.7 6.73374613003096 105 54 95.7 2 6 314 47 150 CDJ89106.1 unnamed protein product [Haemonchus contortus] diamond 2175 90.5 0.991160220994475 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Haemonchus Haemonchus contortus
32845219 32845219 PRJDB4470_P_NODE_60560_length_248_cov_1.613065_g59405_i0 PRJDB4470 60560 248 1.613065 4.0004012 Aphelenchoides bicaudatus 293665 Nematoda Nematoda 70.5 5.72e-13   NR KAI6171597.1 293665 g59405 i0 48.8 4.74193548387097 80 41 96.8 0 3 242 82 161 KAI6171597.1 60S ribosomal protein L21 [Aphelenchoides bicaudatus] diamond 1176 70.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides bicaudatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;