RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJDB4470", tax_kingdom = "Fungi" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

  • Fungi · 3 ✖

tax_clade 1

bioproject 1

  • PRJDB4470 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27253626 27253626 PRJDB4470_P_NODE_93783_length_177_cov_2.679688_g92628_i0 PRJDB4470 93783 177 2.679688 4.74304776 Geranomyces variabilis 109894 Fungi Fungi 108 1.97e-27   NR KAI8585387.1 109894 g92628 i0 81 0.983050847457627 58 11 98.3 0 175 2 100 157 KAI8585387.1 Rab43 protein [Geranomyces variabilis] diamond 174 108 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Geranomyces Geranomyces variabilis
30126977 30126977 PRJDB4470_P_NODE_103592_length_167_cov_1.703390_g102437_i0 PRJDB4470 103592 167 1.70339 2.8446613 Hyaloraphidium curvatum 82268 Fungi Fungi 48.9 8.89e-5   NR KAI9032110.1 82268 g102437 i0 76 0.449101796407186 25 6 44.9 0 165 91 278 302 KAI9032110.1 SNF2 family N-terminal domain-containing protein [Hyaloraphidium curvatum] diamond 75 48.9 1 Eukaryota Opisthokonta Fungi Chytridiomycota Monoblepharidomycetes Monoblepharidales   Hyaloraphidium Hyaloraphidium curvatum
32467175 32467175 PRJDB4470_P_NODE_55819_length_265_cov_1.824074_g54664_i0 PRJDB4470 55819 265 1.824074 4.8337961 Anaeromyces robustus 1754192 Fungi Fungi 50.8 6.94e-5   NR ORX79042.1 1754192 g54664 i0 50 0.49811320754717 44 22 49.8 0 36 167 1298 1341 ORX79042.1 hypothetical protein BCR32DRAFT_294674 [Anaeromyces robustus] diamond 132 50.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Anaeromyces Anaeromyces robustus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;