RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJDB4470" and tax_clade = "delta/epsilon subdivisions"

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analysis 2

tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJDB4470 · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25207468 25207468 PRJDB4470_P_NODE_58400_length_255_cov_3.398058_g57245_i0 PRJDB4470 58400 255 3.398058 8.6650479 Bacteria 2 Bacteria Bacteria 340 4.4199999999999996e-89   NTclustered gi|344050800|gb|JN409206.1| 34034 g57245 i0 92.797 93.6705882352941 236 15 92 2 1 235 737 503 Uncultured delta proteobacterium clone HG-B02128 16S ribosomal RNA gene, partial sequence blastn 23886 340 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
28769338 28769338 PRJDB4470_P_NODE_84507_length_191_cov_1.422535_g83352_i0 PRJDB4470 84507 191 1.422535 2.71704185 Deltaproteobacteria bacterium HGW-Deltaproteobacteria-8 2013758 Bacteria Bacteria 108 1.65e-25   NR PKN07903.1 2013758 g83352 i0 84.1 3.95811518324607 63 10 99 0 191 3 173 235 PKN07903.1 MAG: DNA methyltransferase [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-8] diamond 756 108 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-8

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;