RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJDB4470", tax_clade = "Sar" and tax_phylum = "Oomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 6 ✖

tax_clade 1

bioproject 1

  • PRJDB4470 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3531991 3531991 PRJDB4470_P_NODE_55403_length_267_cov_0.935780_g54248_i0 PRJDB4470 55403 267 0.93578 2.4985326 Albugo 65356 SAR_Eukaryotes SAR_Eukaryotes 333 7.789999999999999e-87   NTclustered gi|325181427|emb|FR824061.1| 890382 g54248 i0 89.219 2.01498127340824 269 25 100 4 1 267 114706 114972 Albugo laibachii Nc14, genomic contig CONTIG_16_NC14_v4_210924_216 blastn 538 333 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
4809146 4809146 PRJDB4470_P_NODE_107064_length_166_cov_0.888889_g105909_i0 PRJDB4470 107064 166 0.888889 1.47555574 root 1 Root_unresolved Root_unresolved 307 2.69e-79   NTclustered gi|166044505|emb|CU367414.1| 100861 g105909 i0 100 81.2831325301205 166 0 100 0 1 166 344 509 Aphanomyces euteiches cDNA blastn 13493 307 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
7661951 7661951 PRJDB4470_P_NODE_56867_length_261_cov_1.948113_g55712_i0 PRJDB4470 56867 261 1.948113 5.08457493 Lagenidium deciduum 884619 SAR_Eukaryotes SAR_Eukaryotes 442 1.2099999999999994e-119   NTclustered gi|320578977|gb|HQ395660.1| 884619 g55712 i0 99.587 95.2643678160919 242 1 93 0 20 261 3 244 Lagenidium sp. PWL-2010c strain CBS 127042 28S ribosomal RNA gene, partial sequence blastn 24864 442 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium deciduum
8634537 8634537 PRJDB4470_P_NODE_86887_length_187_cov_1.884058_g85732_i0 PRJDB4470 86887 187 1.884058 3.52318846 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 315 1.85e-81   NTclustered gi|33520249|gb|AY273994.1| 127444 g85732 i0 97.297 99.7647058823529 185 5 99 0 3 187 258 442 Pythium undulatum large subunit ribosomal RNA gene, partial sequence blastn 18656 318 0.990566037735849 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Elongisporangium Elongisporangium undulatum
16586258 16586258 PRJDB4470_P_NODE_29574_length_424_cov_1.333333_g28433_i0 PRJDB4470 29574 424 1.333333 5.65333192 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 103 8.27e-24   NR KAJ8578052.1 4785 g28433 i0 52 0.870283018867924 123 39 87 3 422 54 159 261 KAJ8578052.1 hypothetical protein ON010_g1153 [Phytophthora cinnamomi] diamond 369 103 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
32176439 32176439 PRJDB4470_P_NODE_34958_length_378_cov_4.714286_g33806_i0 PRJDB4470 34958 378 4.714286 17.82000108 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 76.3 5.22e-14   NR OQR92236.1 1202772 g33806 i0 64.3 6.11904761904762 56 20 44.4 0 86 253 171 226 OQR92236.1 pre-mRNA-splicing factor syf2 [Achlya hypogyna] diamond 2313 77 0.990909090909091 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya hypogyna

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;