RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJDB4470", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 4 ✖

tax_clade 1

bioproject 1

  • PRJDB4470 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1284176 1284176 PRJDB4470_P_NODE_89402_length_184_cov_1.007407_g88247_i0 PRJDB4470 89402 184 1.007407 1.85362888 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 235 1.4499999999999998e-57   NTclustered gi|820695469|tpe|LN714488.1| 572307 g88247 i0 95.302 37.3152173913044 149 5 100 2 1 149 300046 299900 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 6866 235 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
3835916 3835916 PRJDB4470_P_NODE_71984_length_216_cov_1.197605_g70829_i0 PRJDB4470 71984 216 1.197605 2.5868268 Babesia ovata 189622 SAR_Eukaryotes SAR_Eukaryotes 357 3.61e-94   NTclustered gi|1624698154|ref|XM_029013945.1| 189622 g70829 i0 96.759 29.4814814814815 216 4 100 2 1 216 90 302 Babesia ovata vWA domain-like family protein, putative (BOVATA_050280), partial mRNA blastn 6368 357 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia ovata
6084624 6084624 PRJDB4470_P_NODE_98425_length_171_cov_2.090164_g97270_i0 PRJDB4470 98425 171 2.090164 3.57418044 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.004   NTclustered gi|117575160|emb|AM055942.3| 383379 g97270 i0 94.444 4.33333333333333 36 1 20 1 52 86 773073 773108 Toxoplasma gondii RH, genomic DNA chromosome Ia blastn 741 54.7 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii
29463634 29463634 PRJDB4470_P_NODE_48650_length_296_cov_1.639676_g47497_i0 PRJDB4470 48650 296 1.639676 4.85344096 Gregarina niphandrodes 110365 SAR_Eukaryotes SAR_Eukaryotes 71.2 2.79e-13   NR XP_011134169.1 110365 g47497 i0 39.4 0.952702702702703 94 54 95.3 2 2 283 11 101 XP_011134169.1 hypothetical protein GNI_146750 [Gregarina niphandrodes] diamond 282 71.2 1 Eukaryota Sar   Apicomplexa Conoidasida Eugregarinorida Gregarinidae Gregarina Gregarina niphandrodes

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;