RNAquarium Metadata Server
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contig_metadata

11 rows where bioproject = "PRJDB4470", tax_clade = "Opisthokonta" and tax_phylum = "Rotifera"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rotifera · 11 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 11 ✖

bioproject 1

  • PRJDB4470 · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6387486 6387486 PRJDB4470_P_NODE_14306_length_650_cov_3.618968_g13305_i0 PRJDB4470 14306 650 3.618968 23.523292 Brachionus 10194 Rotifera other_Eukaryota 286 7.7e-96   NR RNA30310.1 10195 g13305 i0 82.8 1.59692307692308 174 29 80.3 1 615 94 1 173 RNA30310.1 calcineurin subunit B type 2 [Brachionus plicatilis] diamond 1038 286 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus plicatilis
14037934 14037934 PRJDB4470_P_NODE_84832_length_190_cov_2.517730_g83677_i0 PRJDB4470 84832 190 2.51773 4.783687 Lecane bulla 96446 Rotifera other_Eukaryota 239 1.17e-58   NTclustered gi|61200802|gb|AY829083.1| 96446 g83677 i0 89.231 48.1368421052632 195 15 100 2 1 190 1960 1767 Lecane bulla 28S ribosomal RNA gene, partial sequence blastn 9146 239 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Lecanidae Lecane Lecane bulla
17559220 17559220 PRJDB4470_P_NODE_31874_length_403_cov_2.016949_g30727_i0 PRJDB4470 31874 403 2.016949 8.12830447 Eurotatoria 2816136 Rotifera other_Eukaryota 671 0   NTclustered gi|37785582|gb|AY210469.1| 96448 g30727 i0 98.177 49.4813895781638 384 7 95 0 20 403 2308 1925 Philodina roseola 28S ribosomal RNA gene, partial sequence blastn 19941 676 0.992603550295858 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina roseola
20107965 20107965 PRJDB4470_P_NODE_79916_length_199_cov_1.646667_g78761_i0 PRJDB4470 79916 199 1.646667 3.27686733 Ploima 84394 Rotifera other_Eukaryota 300 5.5900000000000004e-77   NTclustered gi|61200802|gb|AY829083.1| 96446 g78761 i0 93.939 23.9597989949749 198 12 99 0 1 198 1694 1497 Lecane bulla 28S ribosomal RNA gene, partial sequence blastn 4768 300 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Lecanidae Lecane Lecane bulla
27032375 27032375 PRJDB4470_P_NODE_84562_length_191_cov_1.239437_g83407_i0 PRJDB4470 84562 191 1.239437 2.36732467 Adineta ricciae 249248 Rotifera other_Eukaryota 51.2 3.16e-6   NR CAF0905598.1 249248 g83407 i0 63.6 0.518324607329843 33 12 51.8 0 91 189 73 105 CAF0905598.1 unnamed protein product [Adineta ricciae] diamond 99 51.2 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta ricciae
27948519 27948519 PRJDB4470_P_NODE_75125_length_209_cov_1.237500_g73970_i0 PRJDB4470 75125 209 1.2375 2.586375 Rotaria sp. Silwood1 2762511 Rotifera other_Eukaryota 90.1 2.7e-19   NR CAF3329157.1 2762511 g73970 i0 69.7 2.18181818181818 76 16 99 3 2 208 214 289 CAF3329157.1 unnamed protein product [Rotaria sp. Silwood1] diamond 456 90.1 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria sp. Silwood1
30664384 30664384 PRJDB4470_P_NODE_69553_length_222_cov_1.161850_g68398_i0 PRJDB4470 69553 222 1.16185 2.579307 Brachionus calyciflorus 104777 Rotifera other_Eukaryota 117 1.3799999999999998e-31   NR CAF0775232.1 104777 g68398 i0 75 0.972972972972973 72 18 97.3 0 5 220 5 76 CAF0775232.1 unnamed protein product [Brachionus calyciflorus] diamond 216 117 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus
31075225 31075225 PRJDB4470_P_NODE_40295_length_342_cov_1.744027_g39143_i0 PRJDB4470 40295 342 1.744027 5.96457234 Brachionus calyciflorus 104777 Rotifera other_Eukaryota 172 5.74e-48   NR CAF0976858.1 104777 g39143 i0 71.7 0.991228070175439 113 31 99.1 1 4 342 65 176 CAF0976858.1 unnamed protein product [Brachionus calyciflorus] diamond 339 172 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus
31391438 31391438 PRJDB4470_P_NODE_89756_length_183_cov_1.522388_g88601_i0 PRJDB4470 89756 183 1.522388 2.78597004 Brachionus calyciflorus 104777 Rotifera other_Eukaryota 53.5 7.85e-7   NR CAF1045442.1 104777 g88601 i0 60 0.655737704918033 40 16 65.6 0 179 60 83 122 CAF1045442.1 unnamed protein product [Brachionus calyciflorus] diamond 120 53.5 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus
32530408 32530408 PRJDB4470_P_NODE_46119_length_309_cov_1.600000_g44966_i0 PRJDB4470 46119 309 1.6 4.944 Brachionus calyciflorus 104777 Rotifera other_Eukaryota 176 5.2e-52   NR CAF0768596.1 104777 g44966 i0 79.4 0.990291262135922 102 21 99 0 3 308 135 236 CAF0768596.1 unnamed protein product [Brachionus calyciflorus] diamond 306 176 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus
32870809 32870809 PRJDB4470_P_NODE_118880_length_163_cov_0.912281_g117725_i0 PRJDB4470 118880 163 0.912281 1.48701803 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 67.4 7.48e-12   NR AFQ96956.1 104786 g117725 i0 77.8 1.98773006134969 36 8 66.3 0 56 163 160 195 AFQ96956.1 cytochrome c oxidase subunit 2 [Habrotrocha constricta] diamond 324 67.8 0.994100294985251 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Habrotrochidae Habrotrocha Habrotrocha constricta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;